Maker 2.2.8: Difference between revisions
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module-whatis "Adds maker 2.28 to your environment" | module-whatis "Adds maker 2.28 to your environment" | ||
module load BLAST+/2.2.28 RepeatMasker/4.0.3 exonerate/2.2.0-x86_64 snap/2013-11-29 | module load BLAST+/2.2.28 RepeatMasker/4.0.3 exonerate/2.2.0-x86_64 snap/2013-11-29 | ||
set maker_228_root /cm/shared/apps/WUR/ABGC/maker/maker-2.28/src/bin | set maker_228_root /cm/shared/apps/WUR/ABGC/maker/maker-2.28/src/bin | ||
setenv TMPDIR /local | |||
prepend-path PATH $maker_228_root | prepend-path PATH $maker_228_root | ||
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prepend-path PERL5LIB $maker_228_perllib | prepend-path PERL5LIB $maker_228_perllib | ||
</source> | </source> | ||
Revision as of 21:25, 20 December 2013
Maker is a gene prediction/annotation pipeline.
Module file
The module file can be found in this location:
/cm/shared/apps/WUR/ABGC/modulefiles
<source lang='tcl'>
- %Module1.0#######################################################################
- maker 2.28 modulefile
proc ModulesHelp { } {
puts stderr "\tAdds maker 2.28 to your environment"
}
module-whatis "Adds maker 2.28 to your environment"
module load BLAST+/2.2.28 RepeatMasker/4.0.3 exonerate/2.2.0-x86_64 snap/2013-11-29
set maker_228_root /cm/shared/apps/WUR/ABGC/maker/maker-2.28/src/bin setenv TMPDIR /local
prepend-path PATH $maker_228_root set maker_228_perllib /cm/shared/apps/WUR/ABGC/maker/maker-2.28/perl/lib:/cm/shared/apps/WUR/ABGC/maker/maker-2.28/lib
prepend-path PERL5LIB $maker_228_perllib
</source>