ABGSA

Metadata database

 +-----------------------+
 | Tables_in_ABGSAschema |
 +-----------------------+
 | ABGSAschema_main      |
 | filesize              |
 | fqfile_attributes     |
 | gc_cont               |
 +-----------------------+

<source lang='mysql'> CREATE TABLE `ABGSAschema_main` (

 `archive_name` varchar(9) DEFAULT NULL,
 `lane_names_orig` varchar(120) NOT NULL DEFAULT ,
 `readno` varchar(6) DEFAULT NULL,
 `ABG_individual_id` varchar(40) DEFAULT NULL,
 `PORHAPNUMBER` varchar(40) DEFAULT NULL,
 `HapMap60Kcheck` varchar(45) DEFAULT NULL,
 `perc_ident` float DEFAULT NULL,
 `indiv_pop_generic_name` varchar(60) DEFAULT NULL,
 `library_type` varchar(40) DEFAULT NULL,
 `md5sum_gzip` varchar(35) DEFAULT NULL,
 `md5sum_txt` varchar(35) DEFAULT NULL,
 `seq_format` varchar(8) DEFAULT NULL,
 `qscore_format` varchar(16) DEFAULT NULL,
 `generated_by` varchar(30) DEFAULT NULL,
 `Machine_type` varchar(30) DEFAULT NULL,
 `date_generated` varchar(12) DEFAULT NULL,
 `Lane_in_run` varchar(4) DEFAULT NULL,
 `lib_previously_known_as` varchar(30) DEFAULT NULL,
 `remark` varchar(100) DEFAULT NULL,
 PRIMARY KEY (`lane_names_orig`)

) ENGINE=InnoDB DEFAULT CHARSET=latin1 | </source>