JBrowse: Difference between revisions
Jump to navigation
Jump to search
| Line 9: | Line 9: | ||
** https://jbrowse.hpcagrogenomics.wur.nl/turkey/ | ** https://jbrowse.hpcagrogenomics.wur.nl/turkey/ | ||
* Users are free to add usefull commands to this tutorial | * Users are free to add usefull commands to this tutorial | ||
=== Install JBrowse === | |||
Download the latest JBrowse here: http://jbrowse.org/ | |||
Run the setup script to install perl dependencies and required modules | |||
<source lang='bash'> | |||
unzip JBrowse-1.12.0.zip | |||
./setup.sh | |||
</source> | |||
=== Add reference sequence === | |||
===Trim sequences for quality and adapters=== | ===Trim sequences for quality and adapters=== | ||
Revision as of 09:55, 27 January 2016
Typical commands used to set up a JBrowse
Author: Martijn Derks
- JBrowse is available for multiple species:
- Users are free to add usefull commands to this tutorial
Install JBrowse
Download the latest JBrowse here: http://jbrowse.org/
Run the setup script to install perl dependencies and required modules
<source lang='bash'> unzip JBrowse-1.12.0.zip ./setup.sh </source>