JBrowse: Difference between revisions
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* JBrowse is available for multiple species: | * JBrowse is available for multiple species: | ||
** https://jbrowse.hpcagrogenomics.wur.nl/pig/ | ** https://jbrowse.hpcagrogenomics.wur.nl/pig/ | ||
** https://jbrowse.hpcagrogenomics.wur.nl/chicken/ | ** https://jbrowse.hpcagrogenomics.wur.nl/chicken/ | ||
** https://jbrowse.hpcagrogenomics.wur.nl/cattle/ | ** https://jbrowse.hpcagrogenomics.wur.nl/cattle/ | ||
** https://jbrowse.hpcagrogenomics.wur.nl/turkey/ | ** https://jbrowse.hpcagrogenomics.wur.nl/turkey/ | ||
* Users are free to add usefull commands to this tutorial | * Users are free to add usefull commands to this tutorial | ||
* Use case in wintermoth. 12 samples (1 Egg, 1 Caterpillar, 3x3 Pupa, 1 Moth). | * Use case in wintermoth. 12 samples (1 Egg, 1 Caterpillar, 3x3 Pupa, 1 Moth). | ||
===Trim sequences for quality and adapters=== | ===Trim sequences for quality and adapters=== | ||
Revision as of 09:50, 27 January 2016
Typical commands used to set up a JBrowse
Author: Martijn Derks
- JBrowse is available for multiple species:
- Users are free to add usefull commands to this tutorial
- Use case in wintermoth. 12 samples (1 Egg, 1 Caterpillar, 3x3 Pupa, 1 Moth).