Provean 1.1.3: Difference between revisions
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* [[Globally_installed_software | Globally installed software]] | * [[Globally_installed_software | Globally installed software]] | ||
* [[ABGC_modules | ABGC specific modules]] | * [[ABGC_modules | ABGC specific modules]] | ||
* [[Provean_Sus_scrofa | Mapping all known Sus scrofa variants with Provean]] | |||
== External links == | == External links == | ||
Revision as of 11:51, 27 December 2013
PROVEAN was developed to predict whether a protein sequence variation affects protein function.
Module file
The module file can be found in this location:
/cm/shared/apps/WUR/ABGC/modulefiles
<source lang='tcl'>
- %Module1.0#######################################################################
- Provean 1.1.3 modulefile
proc ModulesHelp { } {
puts stderr "\tAdds Provean 1.1.3 to your environment"
}
module-whatis "Adds Provean 1.1.3 to your environment"
set provean_113_root /cm/shared/apps/WUR/ABGC/provean/provean-1.1.3/bin/
prepend-path PATH $provean_113_root
</source>
Installation details
Compiled from source. <source lang='bash'> ./configure --prefix=/cm/shared/apps/WUR/ABGC/provean/provean-1.1.3/ PSIBLAST=/cm/shared/apps/WUR/ABGC/blast/ncbi-blast-2.2.28+/bin/psiblast BLASTDBCMD=/cm/shared/apps/WUR/ABGC/blast/ncbi-blast-2.2.28+/bin/blastdbcmd CDHIT=/cm/shared/apps/WUR/ABGC/cd-hit/cd-hit-v4.6.1-2012-08-27/cd-hit BLAST_DB=/lustre/nobackup/WUR/ABGC/shared/public_data_store/nrdb/nrdb_241213/nr make make install </source>
See also
- Globally installed software
- ABGC specific modules
- Mapping all known Sus scrofa variants with Provean