Provean 1.1.3: Difference between revisions
(Created page with "[http://provean.jcvi.org/about.php PROVEAN] was developed to predict whether a protein sequence variation affects protein function. == Module file == The module file can be f...") |
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== External links == | == External links == | ||
* [http:// | * [http://provean.jcvi.org/downloads/provean.acmbcb.pdf Provean paper] | ||
* [http://provean.jcvi.org/about.php Explanation of Provean algorithm]] | |||
* [http://provean.jcvi.org/downloads/README Provean README] | |||
* [ftp://ftp.ncbi.nih.gov/blast/db/ Location of nr. db. at NCBI] | |||
* [http://weizhong-lab.ucsd.edu/cd-hit/ CD-HIT official website] | |||
Revision as of 21:23, 24 December 2013
PROVEAN was developed to predict whether a protein sequence variation affects protein function.
Module file
The module file can be found in this location:
/cm/shared/apps/WUR/ABGC/modulefiles
<source lang='tcl'>
- %Module1.0#######################################################################
- Provean 1.1.3 modulefile
proc ModulesHelp { } {
puts stderr "\tAdds Provean 1.1.3 to your environment"
}
module-whatis "Adds Provean 1.1.3 to your environment"
set provean_113_root /cm/shared/apps/WUR/ABGC/provean/provean-1.1.3/bin/
prepend-path PATH $provean_113_root
</source>
Installation details
Compiled from source using. <source lang='bash'> ./configure --prefix=/cm/shared/apps/WUR/ABGC/provean/provean-1.1.3/ PSIBLAST=/cm/shared/apps/WUR/ABGC/blast/ncbi-blast-2.2.28+/bin/psiblast BLASTDBCMD=/cm/shared/apps/WUR/ABGC/blast/ncbi-blast-2.2.28+/bin/blastdbcmd CDHIT=/cm/shared/apps/WUR/ABGC/cd-hit/cd-hit-v4.6.1-2012-08-27/cd-hit BLAST_DB=/cm/shared/apps/WUR/ABGC/public_data_resources/nrdb/nrdb_241213/nr make make install </source>