Blat v35

BLAT (BLAST-like alignment tool) is a pairwise sequence alignment algorithm that was developed by Jim Kent at the University of California Santa Cruz (UCSC) in the early 2000s to assist in the assembly and annotation of the Human Genome.

Module file

The module file can be found in this location:

 /cm/shared/modulefiles/SHARED/

<source lang='tcl'>

1. %Module1.0#######################################################################
   1. blat suite (v35) plus tools (2013-20-12 download) modulefile

proc ModulesHelp { } {

       puts stderr "\tAdds the entire blat suite (v35) including blat tools (2013-20-12 download) to your environment"

}

module-whatis "Adds the entire blat suite (v35) including blat tools (2013-20-12 download) to your environment"

set blat_root /cm/shared/apps/SHARED/blat/blat-v35/blat set blat_tools_root /cm/shared/apps/SHARED/blat/blat-v35 prepend-path PATH $blat_tools_root prepend-path PATH $blat_root

</source>

Installation details

The entire suite of binaries/executable was downloaded on 20-12-2013: <source lang='bash'> rsync -aP rsync://hgdownload.cse.ucsc.edu/genome/admin/exe/linux.x86_64/ ./ </source>

See also

• Globally installed software
• ABGC specific modules

External links

• Blat at UCSC
• Download page of 64-bit executables for Linux