ABGC bioinformatics: Difference between revisions
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The ABGC has several shared | The ABGC has several shared bioinformatics facilities. | ||
== | |||
== Bioinformatics at the Animal Breeding and Genetics chairgroup == | |||
* [[Monday Genome Meeting | Monday Genome Meeting]] | |||
* [[Bioinformatics topics at ABG Chairgroup | Bioinformatics: topics]] | |||
* [[Bioinformatics protocols ABG Chairgroup | best practices, tips and workflows]] | |||
== Bioinformatics at the Genetics and Genomics Research Cluster == | == Bioinformatics at the Genetics and Genomics Research Cluster == | ||
== Bioinformatics infrastructure == | == Bioinformatics infrastructure == | ||
Schematic of bioinformatics infrastructure at ABGC. All servers are running Red Hat Enterprise Linux (RHEL). Jobs can be [[submit job with qsub | submitted]] with the Sun Grid Engine (SGE). A user account is needed to work on the machines. | |||
[[File:Bioinformatics-infra2.gif|thumb|left|600px]] | |||
{{-}} | |||
* scomp1038 aka lx5 aka abgc.asg.wur.nl: a VM hosted by FB-ICT. | |||
* scomp1090 aka lx6: HP Proliant server with 48 cores and 512GB RAM. | |||
* scomp1095 aka lx7: HP Proliant server with 48 cores and 192GB RAM. | |||
Lx5-7 naming scheme was inspired by earlier Linux servers at the ABGC. Lx3 got discontinued in 2010, Lx4 in 2011. | |||
Latest revision as of 20:44, 4 March 2012
The ABGC has several shared bioinformatics facilities.
Bioinformatics at the Animal Breeding and Genetics chairgroup
Bioinformatics at the Genetics and Genomics Research Cluster
Bioinformatics infrastructure
Schematic of bioinformatics infrastructure at ABGC. All servers are running Red Hat Enterprise Linux (RHEL). Jobs can be submitted with the Sun Grid Engine (SGE). A user account is needed to work on the machines.
- scomp1038 aka lx5 aka abgc.asg.wur.nl: a VM hosted by FB-ICT.
- scomp1090 aka lx6: HP Proliant server with 48 cores and 512GB RAM.
- scomp1095 aka lx7: HP Proliant server with 48 cores and 192GB RAM.
Lx5-7 naming scheme was inspired by earlier Linux servers at the ABGC. Lx3 got discontinued in 2010, Lx4 in 2011.