TopHat 2.0.11: Difference between revisions
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(Created page with "'''http://tophat.cbcb.umd.edu TopHat]''' is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput...") |
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'''http://tophat.cbcb.umd.edu TopHat]''' is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. | '''[http://tophat.cbcb.umd.edu TopHat]''' is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. | ||
== Module file == | == Module file == | ||
Latest revision as of 17:43, 15 March 2014
TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons.
Module file
The module file can be found in this location:
/cm/shared/modulefiles/SHARED/
<source lang='tcl'>
- %Module1.0#######################################################################
- tophat 2.0.11 modulefile
proc ModulesHelp { } {
puts stderr "\tAdds tophat 2.0.11 to your environment"
}
module load bowtie/2-2.2.1
module-whatis "Adds tophat 2.0.11 to your environment"
set tophat_2011_root /cm/shared/apps/SHARED/tophat/tophat-2.0.11.Linux_x86_64/
prepend-path PATH $tophat_2011_root
</source>
Installation details
Downloaded as pre-compiled binaries on 15-03-2014:
http://tophat.cbcb.umd.edu/downloads/tophat-2.0.11.Linux_x86_64.tar.gz