Jellyfish 2.1.1: Difference between revisions
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(Created page with "'''[http://soap.genomics.org.cn/soapdenovo.html#intro2 SOAPdenovo2]''' is a popular genome assembler. == Module file == The module file can be found in this location: /cm/...") |
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'''[http:// | '''[http://www.cbcb.umd.edu/software/jellyfish/ Jellyfish]''' is a fast, parallel k-mer counter for DNA. | ||
== Module file == | == Module file == | ||
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/cm/shared/modulefiles/SHARED/ | /cm/shared/modulefiles/SHARED/ | ||
< | <pre> | ||
#%Module1.0####################################################################### | #%Module1.0####################################################################### | ||
## Jellyfish 2.1.1 modulefile | ## Jellyfish 2.1.1 modulefile | ||
| Line 27: | Line 26: | ||
prepend-path PKG_CONFIG_PATH $jellyfish_211_pkg | prepend-path PKG_CONFIG_PATH $jellyfish_211_pkg | ||
</ | </pre> | ||
== Installation details == | == Installation details == | ||
Compiled from source using the stock gcc 4.4 of Scientific Linux on 15-03-2014: | |||
http:// | http://www.genome.umd.edu/jellyfish.html | ||
== See also == | == See also == | ||
| Line 40: | Line 40: | ||
== External links == | == External links == | ||
* [http:// | * [http://www.cbcb.umd.edu/software/jellyfish/ Jellyfish home page] | ||
Latest revision as of 14:49, 15 June 2023
Jellyfish is a fast, parallel k-mer counter for DNA.
Module file
The module file can be found in this location:
/cm/shared/modulefiles/SHARED/
#%Module1.0#######################################################################
## Jellyfish 2.1.1 modulefile
##
proc ModulesHelp { } {
puts stderr "\tAdds Jellyfish 2.1.1 to your environment"
}
module-whatis "Adds Jellyfish 2.1.1 to your environment"
set jellyfish_211_bin /cm/shared/apps/SHARED/jellyfish/jellyfish-2.1.1/bin/bin
set jellyfish_211_ldpath /cm/shared/apps/SHARED/jellyfish/jellyfish-2.1.1/bin/lib
set jellyfish_211_man /cm/shared/apps/SHARED/jellyfish/jellyfish-2.1.1/bin/share/man
set jellyfish_211_pkg /cm/shared/apps/SHARED/jellyfish/jellyfish-2.1.1/bin/lib/pkgconfig
prepend-path PATH $jellyfish_211_bin
prepend-path LD_LIBRARY_PATH $jellyfish_211_ldpath
prepend-path MANPATH $jellyfish_211_man
prepend-path PKG_CONFIG_PATH $jellyfish_211_pkg
Installation details
Compiled from source using the stock gcc 4.4 of Scientific Linux on 15-03-2014:
http://www.genome.umd.edu/jellyfish.html