Provean 1.1.3

PROVEAN was developed to predict whether a protein sequence variation affects protein function.

Module file

The module file can be found in this location:

 /cm/shared/modulefiles/SHARED/

#%Module1.0#######################################################################
## Provean 1.1.3 modulefile
##
proc ModulesHelp { } {

        puts stderr "\tAdds Provean 1.1.3 to your environment"
}

module-whatis   "Adds Provean 1.1.3 to your environment"

set             provean_113_root        /cm/shared/apps/SHARED/provean/provean-1.1.3/bin/

prepend-path     PATH             $provean_113_root

Installation details

Compiled from source.

./configure --prefix=/cm/shared/apps/SHARED/provean/provean-1.1.3/ PSIBLAST=/cm/shared/apps/SHARED/blast/ncbi-blast-2.2.28+/bin/psiblast BLASTDBCMD=/cm/shared/apps/SHARED/blast/ncbi-blast-2.2.28+/bin/blastdbcmd CDHIT=/cm/shared/apps/SHARED/cd-hit/cd-hit-v4.6.1-2012-08-27/cd-hit BLAST_DB=/lustre/shared/public_data_store/nrdb/nrdb_241213/nr
make
make install

See also

• Globally installed software
• ABGC specific modules
• Mapping all known Sus scrofa variants with Provean

External links

• Provean paper
• Explanation of Provean algorithm]
• Provean README
• Location of nr. db. at NCBI
• CD-HIT official website