Cegma 2.4: Difference between revisions

Revision as of 13:02, 21 December 2013

The module file can be found in this location:

 /cm/shared/apps/WUR/ABGC/modulefiles

%Module1.0#######################################################################
1. cegma 2.4 modulefile

proc ModulesHelp { } {

       puts stderr "\tAdds cegma 2.4 to your environment"

}

module-whatis "Adds cegma 2.4 to your environment"

module load BLAST+/2.2.28 genewise/2.2.3-rc7 geneid/1.4.4 hmmer/3.1b1

setenv CEGMA /cm/shared/apps/WUR/ABGC/cegma/cegma_v2.4.010312/

set cegma_24_root /cm/shared/apps/WUR/ABGC/cegma/cegma_v2.4.010312/bin/ set cegma_24_perllib /cm/shared/apps/WUR/ABGC/cegma/cegma_v2.4.010312/lib/

prepend-path PATH $cegma_24_root prepend-path PERL5LIB $cegma_24_perllib

</source>

@@ Line 6: / Line 6: @@
 <source lang='tcl'>
 #%Module1.0#######################################################################
-## bwa 0.7.5a modulefile
+## cegma 2.4 modulefile
 ##
 proc ModulesHelp { } {
-         puts stderr "\tAdds bwa v0.7.5a to your environment"
+         puts stderr "\tAdds cegma 2.4 to your environment"
 }
-module-whatis   "Adds bwa v0.7.5a to your environment"
+module-whatis   "Adds cegma 2.4 to your environment"
-set             bwa_075a_root        /cm/shared/apps/WUR/ABGC/bwa/bwa-0.7.5a
+module load BLAST+/2.2.28 genewise/2.2.3-rc7 geneid/1.4.4 hmmer/3.1b1
-prepend-path     PATH             $bwa_075a_root
+setenv CEGMA /cm/shared/apps/WUR/ABGC/cegma/cegma_v2.4.010312/
+set             cegma_24_root        /cm/shared/apps/WUR/ABGC/cegma/cegma_v2.4.010312/bin/
+set             cegma_24_perllib     /cm/shared/apps/WUR/ABGC/cegma/cegma_v2.4.010312/lib/
+prepend-path     PATH             $cegma_24_root
+prepend-path     PERL5LIB         $cegma_24_perllib
 </source>
@@ Line 28: / Line 33: @@
 == External links ==
-* [http://bio-bwa.sourceforge.net/bwa.shtml BWA manpage]
+* [http://korflab.ucdavis.edu/Datasets/cegma/ CEGMA homepage at Korf Lab]