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SNAP is a general purpose gene finding program suitable for both eukaryotic and prokaryotic genomes. SNAP is an acroynm for Semi-HMM-based Nucleic Acid Parser. | |||
== Module file == | == Module file == | ||
| Line 6: | Line 7: | ||
<source lang='tcl'> | <source lang='tcl'> | ||
#%Module1.0####################################################################### | #%Module1.0####################################################################### | ||
## | ## snap 2013-11-29 modulefile | ||
## | ## | ||
proc ModulesHelp { } { | proc ModulesHelp { } { | ||
puts stderr "\tAdds | puts stderr "\tAdds snap 2013-11-29 to your environment" | ||
} | } | ||
module-whatis "Adds | module-whatis "Adds snap 2013-11-29 to your environment" | ||
prepend-path PATH $ | setenv ZOE /cm/shared/apps/WUR/ABGC/snap/snap-2013-11-29/Zoe | ||
set snap_20131129_root /cm/shared/apps/WUR/ABGC/snap/snap-2013-11-29 | |||
prepend-path PATH $snap_20131129_root | |||
</source> | </source> | ||
== Installation details == | |||
Compiled from source using gcc 4.8. | |||
== Further details == | |||
The package includes a bunch of pre-made hmm profiles: | |||
/cm/shared/apps/WUR/ABGC/snap/snap-2013-11-29/HMM/ | |||
== See also == | == See also == | ||
| Line 28: | Line 38: | ||
== External links == | == External links == | ||
* [http:// | * [http://korflab.ucdavis.edu/software.html Korf Lab software page] | ||
Revision as of 13:00, 21 December 2013
SNAP is a general purpose gene finding program suitable for both eukaryotic and prokaryotic genomes. SNAP is an acroynm for Semi-HMM-based Nucleic Acid Parser.
Module file
The module file can be found in this location:
/cm/shared/apps/WUR/ABGC/modulefiles
<source lang='tcl'>
- %Module1.0#######################################################################
- snap 2013-11-29 modulefile
proc ModulesHelp { } {
puts stderr "\tAdds snap 2013-11-29 to your environment"
}
module-whatis "Adds snap 2013-11-29 to your environment"
setenv ZOE /cm/shared/apps/WUR/ABGC/snap/snap-2013-11-29/Zoe
set snap_20131129_root /cm/shared/apps/WUR/ABGC/snap/snap-2013-11-29
prepend-path PATH $snap_20131129_root
</source>
Installation details
Compiled from source using gcc 4.8.
Further details
The package includes a bunch of pre-made hmm profiles:
/cm/shared/apps/WUR/ABGC/snap/snap-2013-11-29/HMM/