Bwa 7.5: Difference between revisions

From HPCwiki
Jump to navigation Jump to search
No edit summary
Line 23: Line 23:


== See also ==
== See also ==
* [[Globally_installed_software | Globally installed software]]
* [[ABGC_modules | ABGC specific modules]]


== External links ==
== External links ==
* [http://bio-bwa.sourceforge.net/bwa.shtml BWA manpage]
* [http://bio-bwa.sourceforge.net/bwa.shtml BWA manpage]

Revision as of 11:41, 21 December 2013

BWA is a short read aligner designed by Heng Li and currently the most widely used aligner for re-sequencing analysis.

Module file

The module file can be found in this location:

 /cm/shared/apps/WUR/ABGC/modulefiles

<source lang='tcl'>

  1. %Module1.0#######################################################################
    1. bwa 0.5.9 modulefile

proc ModulesHelp { } {

       puts stderr "\tAdds bwa v0.5.9 to your environment"

}

module-whatis "Adds bwa v0.5.9 to your environment"

set bwa_059_root /cm/shared/apps/WUR/ABGC/bwa/bwa-0.5.9/

prepend-path PATH $bwa_059_root

</source>

See also

External links