RAxML8.0.0: Difference between revisions
Jump to navigation
Jump to search
m (<source> to <pre> to fix code blocks) |
|||
| (One intermediate revision by one other user not shown) | |||
| Line 5: | Line 5: | ||
/cm/shared/modulefiles/SHARED/ | /cm/shared/modulefiles/SHARED/ | ||
< | <pre> | ||
#%Module1.0####################################################################### | #%Module1.0####################################################################### | ||
## RAxML 8.0.0 modulefile | ## RAxML 8.0.0 modulefile | ||
| Line 20: | Line 20: | ||
prepend-path PATH $raxml800_root | prepend-path PATH $raxml800_root | ||
</ | </pre> | ||
== Installation details == | == Installation details == | ||
| Line 27: | Line 27: | ||
https://github.com/stamatak/standard-RAxML | https://github.com/stamatak/standard-RAxML | ||
< | <pre> | ||
make -f Makefile.SSE3.gcc | make -f Makefile.SSE3.gcc | ||
make -f Makefile.SSE3.PTHREADS.gcc | make -f Makefile.SSE3.PTHREADS.gcc | ||
make -f Makefile.SSE3.MPI.gcc | make -f Makefile.SSE3.MPI.gcc | ||
</ | </pre> | ||
The file <code>Makefile.SSE3.MPI.gcc</code> has been modified: | The file <code>Makefile.SSE3.MPI.gcc</code> has been modified: | ||
CC = mpicc | CC = mpicc | ||
| Line 37: | Line 37: | ||
The version of <code>openmpi</code> used: | The version of <code>openmpi</code> used: | ||
openmpi/gcc/64/1.6.5 | openmpi/gcc/64/1.6.5 | ||
Note that the MPI version has not been tested - issues may remain. | |||
== See also == | == See also == | ||
Latest revision as of 14:52, 15 June 2023
RAxML (Randomized Axelerated Maximum Likelihood) is a program for sequential and parallel Maximum Likelihood based inference of large phylogenetic trees. It can also be used for postanalyses of sets of phylogenetic trees, analyses of alignments and, evolutionary placement of short reads.
Module file
The module file can be found in this location:
/cm/shared/modulefiles/SHARED/
#%Module1.0#######################################################################
## RAxML 8.0.0 modulefile
##
proc ModulesHelp { } {
puts stderr "\tAdds RAxML8.0.0 to your environment"
}
module-whatis "Adds RAxML8.0.0 to your environment"
set raxml800_root /cm/shared/apps/SHARED/RAxML/RAxML8.0.0
prepend-path PATH $raxml800_root
Installation details
Compiled from source using the stock gcc 4.4 of Scientific Linux on 15-03-2014:
https://github.com/stamatak/standard-RAxML
make -f Makefile.SSE3.gcc make -f Makefile.SSE3.PTHREADS.gcc make -f Makefile.SSE3.MPI.gcc
The file Makefile.SSE3.MPI.gcc has been modified:
CC = mpicc
The version of openmpi used:
openmpi/gcc/64/1.6.5
Note that the MPI version has not been tested - issues may remain.