Geneid 1.4.4: Difference between revisions

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(Created page with " == Module file == The module file can be found in this location: /cm/shared/apps/WUR/ABGC/modulefiles <source lang='tcl'> #%Module1.0######################################...")
 
m (<source> to <pre> to fix code blocks)
 
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[http://genome.crg.es/software/geneid/ geneid] is a program to predict genes in anonymous genomic sequences designed with a hierarchical structure.


== Module file ==
== Module file ==
The module file can be found in this location:
The module file can be found in this location:
   /cm/shared/apps/WUR/ABGC/modulefiles
   /cm/shared/modulefiles/SHARED/


<source lang='tcl'>
<pre>
#%Module1.0#######################################################################
#%Module1.0#######################################################################
## bwa 0.7.5a modulefile
## geneid 1.4.4 modulefile
##
##
proc ModulesHelp { } {
proc ModulesHelp { } {


         puts stderr "\tAdds bwa v0.7.5a to your environment"
         puts stderr "\tAdds geneid v1.4.4 to your environment"
}
}


module-whatis  "Adds bwa v0.7.5a to your environment"
module-whatis  "Adds geneid v1.4.4 to your environment"


set            bwa_075a_root       /cm/shared/apps/WUR/ABGC/bwa/bwa-0.7.5a
set            geneid_144_root       /cm/shared/apps/SHARED/geneid/geneid_v1.4.4/bin/


prepend-path    PATH            $bwa_075a_root
prepend-path    PATH            $geneid_144_root




</source>
</pre>


== Installation details ==
Geneid was compiled from source.


== See also ==
== See also ==
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== External links ==
== External links ==
* [http://bio-bwa.sourceforge.net/bwa.shtml BWA manpage]
* [http://genome.crg.es/software/geneid/ geneid homepage]

Latest revision as of 14:46, 15 June 2023

geneid is a program to predict genes in anonymous genomic sequences designed with a hierarchical structure.

Module file

The module file can be found in this location:

 /cm/shared/modulefiles/SHARED/
#%Module1.0#######################################################################
## geneid 1.4.4 modulefile
##
proc ModulesHelp { } {

        puts stderr "\tAdds geneid v1.4.4 to your environment"
}

module-whatis   "Adds geneid v1.4.4 to your environment"

set             geneid_144_root        /cm/shared/apps/SHARED/geneid/geneid_v1.4.4/bin/

prepend-path     PATH             $geneid_144_root


Installation details

Geneid was compiled from source.

See also

External links