Canu: Difference between revisions
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(Created page with "Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II/Sequel or Oxford Nanopore MinION). Canu is a hierarchical...") |
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Canu is a hierarchical assembly pipeline which runs in four steps: | Canu is a hierarchical assembly pipeline which runs in four steps: | ||
* Detect overlaps in high-noise sequences using MHAP | |||
* Generate corrected sequence consensus | |||
* Trim corrected sequences | |||
* Assemble trimmed corrected sequences | |||
Canu has currently a poor reputation for stealing memory on nodes. Please contact your local system administrator if you wish to use this. | Canu has currently a poor reputation for stealing memory on nodes. Please contact your local system administrator if you wish to use this. | ||
Latest revision as of 15:25, 24 August 2017
Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II/Sequel or Oxford Nanopore MinION).
Canu is a hierarchical assembly pipeline which runs in four steps:
- Detect overlaps in high-noise sequences using MHAP
- Generate corrected sequence consensus
- Trim corrected sequences
- Assemble trimmed corrected sequences
Canu has currently a poor reputation for stealing memory on nodes. Please contact your local system administrator if you wish to use this.