Manual GitLab

Manual GitLab@WUR: Create projects and add files

Signing up

If you haven't done so already, install git in your local machine and sign up at GitLab@WUR:

 https://git.wageningenur.nl

Example of local commands to execute

<source lang='bash'>

1. 1. This shows an example, step by step, to create a project and add files into that project.

1. 1. Configuration:

1. 1. Create a folder in your machine, e.g.:

mkdir ~/Git_Stuff

1. 2. configuration step 1:

git config --global user.name "Herrero Medrano, Juan" git config --global user.email "juan.herreromedrano@wur.nl"

1. 3. configuration step 2: make private-public rsa key pair

ssh-keygen -t rsa cd ~/.ssh/ cat id_rsa.pub

1. Copy the code and go to the git-web: Profile settings -> SSH Keys. Paste the code and add key.
2. IMPORTANT: make sure you use the *public* key, not the private part of the key pair!
3. The configuration is finished.

1. 1. Create a project:

1. 1. Log in https://git.wageningenur.nl. Then create a project (name of the project should not have spaces or dash '-'). In the example, the project is called Turkey_Association
2. 2. Go back to the terminal:

cd ~/Git_Stuff git clone git@git.wageningenur.nl:ABGC_Genomics/Turkey_Association.git

1. Once I have made this connection, my project will appear as a folder in ~/Git_Stuff

1. 1. Add files:
2. Add scripts to the project "Turkey_Association" :

cp myscript.sh ~/Git_Stuff/Turkey_Association cd ~/Git_Stuff/Turkey_Association git add myscript.sh git commit -m "myfirst_commit" git push origin master

1. 1. Remove a directory:

git rm -r one-of-the-directories git commit -m "Remove duplicated directory" git push origin master

</source>

See also

Bioinformatics tips, tricks, workflows at ABGC

External links

• Wikipedia entry on Git
• GitHub, a public Git repository (not to be confused with GitLab@WUR, but uses the same Git versioning software)