Manual GitLab

Manual GitLab@WUR: Create projects and add files

Signing up

If you haven't done so already, install git in your local machine and sign up at GitLab@WUR:

 https://git.wageningenur.nl

Example of local commands to execute

## This shows an example, step by step, to create a project and add files into that project.

## Configuration:

# 1. Create a folder in your machine, e.g.:
mkdir ~/Git_Stuff

# 2. configuration step 1: 
git config --global user.name "Herrero Medrano, Juan"
git config --global user.email "juan.herreromedrano@wur.nl"

# 3. configuration step 2: make private-public rsa key pair
ssh-keygen -t rsa
cd ~/.ssh/
cat id_rsa.pub
# Copy the code and go to the git-web: Profile settings -> SSH Keys. Paste the code and add key. 
# IMPORTANT: make sure you use the *public* key, not the private part of the key pair!
# The configuration is finished. 

## Create a project:

# 1. Log in https://git.wageningenur.nl. Then create a project (name of the project should not have spaces or dash '-'). In the example, the project is called Turkey_Association
# 2. Go back to the terminal:
cd ~/Git_Stuff
git clone git@git.wageningenur.nl:ABGC_Genomics/Turkey_Association.git

# Once I have made this connection, my project will appear as a folder in ~/Git_Stuff


## Add files:
# Add scripts to the project "Turkey_Association" :
cp myscript.sh ~/Git_Stuff/Turkey_Association
cd ~/Git_Stuff/Turkey_Association
git add myscript.sh
git commit -m "myfirst_commit"
git push origin master


## Remove a directory:
git rm -r one-of-the-directories
git commit -m "Remove duplicated directory"
git push origin master

See also

Bioinformatics tips, tricks, workflows at ABGC

External links

• Wikipedia entry on Git
• GitHub, a public Git repository (not to be confused with GitLab@WUR, but uses the same Git versioning software)