Bowtie2 v2.2.1: Difference between revisions
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Created page with " '''[http://soap.genomics.org.cn/soapdenovo.html#intro2 SOAPdenovo2]''' is a popular genome assembler. == Module file == The module file can be found in this location: /cm..." |
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Revision as of 13:52, 15 March 2014
SOAPdenovo2 is a popular genome assembler.
Module file
The module file can be found in this location:
/cm/shared/modulefiles/SHARED/
<source lang='tcl'>
- %Module1.0#######################################################################
- bowtie2-2.2.1 modulefile
proc ModulesHelp { } {
puts stderr "\tAdds bowtie2-2.2.1 to your environment"
}
module-whatis "Adds bowtie2-2.2.1 to your environment"
set bowtie2_2_2_1_root /cm/shared/apps/SHARED/bowtie/bowtie2-2.2.1/
prepend-path PATH $bowtie2_2_2_1_root
</source>
Installation details
The pre-compiled binaries were downloaded from SourceForge on 15-03-2014:
http://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.2.1/
This included the GapCloser software (v1.12) and ErrorCorrection (v0.04)
See also
External links
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