Provean 1.1.3: Difference between revisions

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Compiled from source.
Compiled from source.
<source lang='bash'>
<source lang='bash'>
./configure --prefix=/cm/shared/apps/WUR/ABGC/provean/provean-1.1.3/ PSIBLAST=/cm/shared/apps/WUR/ABGC/blast/ncbi-blast-2.2.28+/bin/psiblast BLASTDBCMD=/cm/shared/apps/WUR/ABGC/blast/ncbi-blast-2.2.28+/bin/blastdbcmd CDHIT=/cm/shared/apps/WUR/ABGC/cd-hit/cd-hit-v4.6.1-2012-08-27/cd-hit BLAST_DB=/lustre/nobackup/WUR/ABGC/shared/public_data_store/nrdb/nrdb_241213/nr
./configure --prefix=/cm/shared/apps/SHARED/provean/provean-1.1.3/ PSIBLAST=/cm/shared/apps/SHARED/blast/ncbi-blast-2.2.28+/bin/psiblast BLASTDBCMD=/cm/shared/apps/SHARED/blast/ncbi-blast-2.2.28+/bin/blastdbcmd CDHIT=/cm/shared/apps/SHARED/cd-hit/cd-hit-v4.6.1-2012-08-27/cd-hit BLAST_DB=/lustre/shared/public_data_store/nrdb/nrdb_241213/nr
make
make
make install
make install

Revision as of 10:09, 15 March 2014

PROVEAN was developed to predict whether a protein sequence variation affects protein function.

Module file

The module file can be found in this location:

 /cm/shared/modulefiles/SHARED/

<source lang='tcl'>

  1. %Module1.0#######################################################################
    1. Provean 1.1.3 modulefile

proc ModulesHelp { } {

       puts stderr "\tAdds Provean 1.1.3 to your environment"

}

module-whatis "Adds Provean 1.1.3 to your environment"

set provean_113_root /cm/shared/apps/SHARED/provean/provean-1.1.3/bin/

prepend-path PATH $provean_113_root


</source>

Installation details

Compiled from source. <source lang='bash'> ./configure --prefix=/cm/shared/apps/SHARED/provean/provean-1.1.3/ PSIBLAST=/cm/shared/apps/SHARED/blast/ncbi-blast-2.2.28+/bin/psiblast BLASTDBCMD=/cm/shared/apps/SHARED/blast/ncbi-blast-2.2.28+/bin/blastdbcmd CDHIT=/cm/shared/apps/SHARED/cd-hit/cd-hit-v4.6.1-2012-08-27/cd-hit BLAST_DB=/lustre/shared/public_data_store/nrdb/nrdb_241213/nr make make install </source>

See also

External links