Bwa 7.5: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
|||
| (4 intermediate revisions by the same user not shown) | |||
| Line 3: | Line 3: | ||
== Module file == | == Module file == | ||
The module file can be found in this location: | The module file can be found in this location: | ||
/cm/shared/ | /cm/shared/modulefiles/SHARED/ | ||
<source lang='tcl'> | <source lang='tcl'> | ||
#%Module1.0####################################################################### | #%Module1.0####################################################################### | ||
## bwa 0. | ## bwa 0.7.5a modulefile | ||
## | ## | ||
proc ModulesHelp { } { | proc ModulesHelp { } { | ||
puts stderr "\tAdds bwa v0. | puts stderr "\tAdds bwa v0.7.5a to your environment" | ||
} | } | ||
module-whatis "Adds bwa v0. | module-whatis "Adds bwa v0.7.5a to your environment" | ||
set | set bwa_075a_root /cm/shared/apps/SHARED/bwa/bwa-0.7.5a | ||
prepend-path PATH $bwa_075a_root | |||
</source> | </source> | ||
== See also == | == See also == | ||
* [[Globally_installed_software | Globally installed software]] | |||
* [[ABGC_modules | ABGC specific modules]] | |||
== External links == | == External links == | ||
* [http://bio-bwa.sourceforge.net/bwa.shtml BWA manpage] | * [http://bio-bwa.sourceforge.net/bwa.shtml BWA manpage] | ||
Latest revision as of 09:57, 15 March 2014
BWA is a short read aligner designed by Heng Li and currently the most widely used aligner for re-sequencing analysis.
Module file
The module file can be found in this location:
/cm/shared/modulefiles/SHARED/
<source lang='tcl'>
- %Module1.0#######################################################################
- bwa 0.7.5a modulefile
proc ModulesHelp { } {
puts stderr "\tAdds bwa v0.7.5a to your environment"
}
module-whatis "Adds bwa v0.7.5a to your environment"
set bwa_075a_root /cm/shared/apps/SHARED/bwa/bwa-0.7.5a
prepend-path PATH $bwa_075a_root
</source>