Bwa 7.5: Difference between revisions

Latest revision as of 09:57, 15 March 2014

BWA is a short read aligner designed by Heng Li and currently the most widely used aligner for re-sequencing analysis.

The module file can be found in this location:

 /cm/shared/modulefiles/SHARED/

%Module1.0#######################################################################
1. bwa 0.7.5a modulefile

proc ModulesHelp { } {

       puts stderr "\tAdds bwa v0.7.5a to your environment"

}

module-whatis "Adds bwa v0.7.5a to your environment"

set bwa_075a_root /cm/shared/apps/SHARED/bwa/bwa-0.7.5a

prepend-path PATH $bwa_075a_root

</source>

@@ Line 1: / Line 1: @@
-BWA is a short read aligner designed by Heng Li and currently the most widely used aligner for re-sequencing analysis.
+[http://en.wikipedia.org/wiki/Burrows-Wheeler_Aligner#Short-Read_Sequence_Alignment BWA] is a short read aligner designed by Heng Li and currently the most widely used aligner for re-sequencing analysis.
 == Module file ==
 The module file can be found in this location:
-   /cm/shared/apps/WUR/ABGC/modulefiles
+   /cm/shared/modulefiles/SHARED/
 <source lang='tcl'>
 #%Module1.0#######################################################################
-## bwa 0.5.9 modulefile
+## bwa 0.7.5a modulefile
 ##
 proc ModulesHelp { } {
-         puts stderr "\tAdds bwa v0.5.9 to your environment"
+         puts stderr "\tAdds bwa v0.7.5a to your environment"
 }
-module-whatis   "Adds bwa v0.5.9 to your environment"
+module-whatis   "Adds bwa v0.7.5a to your environment"
-set             bwa_059_root        /cm/shared/apps/WUR/ABGC/bwa/bwa-0.5.9/
+set             bwa_075a_root        /cm/shared/apps/SHARED/bwa/bwa-0.7.5a
+prepend-path     PATH             $bwa_075a_root
-prepend-path     PATH             $bwa_059_root
 </source>
 == See also ==
+* [[Globally_installed_software | Globally installed software]]
+* [[ABGC_modules | ABGC specific modules]]
 == External links ==
 * [http://bio-bwa.sourceforge.net/bwa.shtml BWA manpage]