RepeatModeler 1.0.7: Difference between revisions
(Created page with " == Module file == The module file can be found in this location: /cm/shared/apps/WUR/ABGC/modulefiles <source lang='tcl'> #%Module1.0######################################...") |
No edit summary |
||
| Line 1: | Line 1: | ||
[http://www.repeatmasker.org/RepeatModeler.html RepeatModeler] is a de-novo repeat family identification and modeling package. At the heart of RepeatModeler are two de-novo repeat finding programs ( RECON and RepeatScout ) which employ complementary computational methods for identifying repeat element boundaries and family relationships from sequence data. RepeatModeler assists in automating the runs of RECON and RepeatScout given a genomic database and uses the output to build, refine and classify consensus models of putative interspersed repeats. | |||
== Module file == | == Module file == | ||
| Line 6: | Line 7: | ||
<source lang='tcl'> | <source lang='tcl'> | ||
#%Module1.0####################################################################### | #%Module1.0####################################################################### | ||
## | ## RepeatModeler 1.0.7 modulefile | ||
## | ## | ||
proc ModulesHelp { } { | proc ModulesHelp { } { | ||
puts stderr "\tAdds | puts stderr "\tAdds RepeatModeler v1.0.7 to your environment" | ||
} | } | ||
module-whatis "Adds | module-whatis "Adds RepeatModeler v1.0.7 to your environment" | ||
set | set repeatmodeler_107_root /cm/shared/apps/WUR/ABGC/RepeatModeler/RepeatModeler-1-0-7/ | ||
prepend-path PATH $repeatmodeler_107_root | |||
</source> | </source> | ||
| Line 28: | Line 28: | ||
== External links == | == External links == | ||
* [http:// | * [http://www.repeatmasker.org/RepeatModeler.html RepeatModeler page] | ||
Revision as of 14:04, 21 December 2013
RepeatModeler is a de-novo repeat family identification and modeling package. At the heart of RepeatModeler are two de-novo repeat finding programs ( RECON and RepeatScout ) which employ complementary computational methods for identifying repeat element boundaries and family relationships from sequence data. RepeatModeler assists in automating the runs of RECON and RepeatScout given a genomic database and uses the output to build, refine and classify consensus models of putative interspersed repeats.
Module file
The module file can be found in this location:
/cm/shared/apps/WUR/ABGC/modulefiles
<source lang='tcl'>
- %Module1.0#######################################################################
- RepeatModeler 1.0.7 modulefile
proc ModulesHelp { } {
puts stderr "\tAdds RepeatModeler v1.0.7 to your environment"
}
module-whatis "Adds RepeatModeler v1.0.7 to your environment"
set repeatmodeler_107_root /cm/shared/apps/WUR/ABGC/RepeatModeler/RepeatModeler-1-0-7/
prepend-path PATH $repeatmodeler_107_root
</source>