View source for Blat v35

'''[http://en.wikipedia.org/wiki/BLAT_(bioinformatics) BLAT]''' (BLAST-like alignment tool) is a pairwise sequence alignment algorithm that was developed by Jim Kent at the University of California Santa Cruz (UCSC) in the early 2000s to assist in the assembly and annotation of the Human Genome.


== Module file ==
The module file can be found in this location:
  /cm/shared/modulefiles/SHARED/

<source lang='tcl'>
#%Module1.0#######################################################################
## blat suite (v35) plus tools (2013-20-12 download) modulefile
##
proc ModulesHelp { } {

        puts stderr "\tAdds the entire blat suite (v35) including blat tools (2013-20-12 download) to your environment"
}

module-whatis   "Adds the entire blat suite (v35) including blat tools (2013-20-12 download) to your environment"

set             blat_root        /cm/shared/apps/SHARED/blat/blat-v35/blat
set             blat_tools_root  /cm/shared/apps/SHARED/blat/blat-v35
prepend-path     PATH             $blat_tools_root
prepend-path     PATH             $blat_root

</source>

== Installation details ==

The entire suite of binaries/executable was downloaded on 20-12-2013:
<source lang='bash'>
rsync -aP rsync://hgdownload.cse.ucsc.edu/genome/admin/exe/linux.x86_64/ ./
</source>

== See also ==
* [[Globally_installed_software | Globally installed software]]
* [[ABGC_modules | ABGC specific modules]]

== External links ==
* [http://genome.ucsc.edu/FAQ/FAQblat.html Blat at UCSC]
* [http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/ Download page of 64-bit executables for Linux]