JBrowse

Typical commands used to set up a JBrowse

Author: Martijn Derks

• JBrowse is available for multiple species:
  • https://jbrowse.hpcagrogenomics.wur.nl/pig/
  • https://jbrowse.hpcagrogenomics.wur.nl/chicken/
  • https://jbrowse.hpcagrogenomics.wur.nl/cattle/
  • https://jbrowse.hpcagrogenomics.wur.nl/turkey/
• Users are free to add usefull commands to this tutorial
• Use case in wintermoth. 12 samples (1 Egg, 1 Caterpillar, 3x3 Pupa, 1 Moth).