JBrowse

From HPCwiki

Revision as of 10:48, 27 January 2016 by Derks047 (talk | contribs) (Created page with "=== Typical commands used to set up a JBrowse === Author: Martijn Derks * JBrowse is available for multiple species: - https://jbrowse.hpcagrogenomics.wur.nl/pig/ - https:/...")

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)

Jump to navigation Jump to search

Typical commands used to set up a JBrowse

Author: Martijn Derks

JBrowse is available for multiple species:

- https://jbrowse.hpcagrogenomics.wur.nl/pig/ - https://jbrowse.hpcagrogenomics.wur.nl/chicken/ - https://jbrowse.hpcagrogenomics.wur.nl/cattle/ - https://jbrowse.hpcagrogenomics.wur.nl/turkey/

Users are free to add usefull commands to this tutorial
Use case in wintermoth. 12 samples (1 Egg, 1 Caterpillar, 3x3 Pupa, 1 Moth).

Trim sequences for quality and adapters

Retrieved from "https://wiki.anunna.wur.nl/index.php?title=JBrowse&oldid=1712"