User:Herrer01

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Juan Manuel Herrero Medrano

Postdoctoral position at Wageningen University, Animal Breeding and Genomics Centre.

Scientific interests:

Bioinformatics
Next Generation Sequence data and High-density SNP arrays analysis
Functional genomics
Population genomics

Main current projects

Storage, mapping variants calling analysis on re-sequence data on various livestock species
Functional aspects of turkey genome variation
De novo assembly and annotation of genomes

Procedures

Main sequencing platform is Illumina (We started in 2008 on Solexa GA, to currently Illumina HiSeq).
Short-read mapping (Mosaik, BWA)
Variant calling (Samtools, GATK, ANGSD).
Functional analysis of variants (Annovar, Variant Effect Predictor)
Various population- and phylogenomic approaches

Main programming languages:

Linux shell scripting
Python
R

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