Deletion log

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Below is a list of the most recent deletions.

Logs
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  • 13:05, 29 May 2026 Haars0011 talk contribs deleted page Assemble mitochondrial genomes from short read data (content was: "A simple procedure for assembling mitochondrial genomes based on whole-genome re-sequencing data. The first step is to extract reads from the sequence library based on a closely related entirely assembled genome (e.g., for pig, the MT genome as present in the genome build, but could also be of a related species). The genome is then assembled using SOAPdenovo. * a reference genome of a closely related population or species. * a bowtie2 index (make with bowtie2_build) * a blasta...")
  • 13:05, 29 May 2026 Haars0011 talk contribs deleted page Animal Breeding and Genetics (content was: "The [http://www.abg.wur.nl/UK/ Animal Breeding and Genetics] chair group provides education and generates knowledge on the role and sustainable use of genetic variation in animals. The Animal Breeding and Genetics group contributes to our quality of life by providing knowledge to support the adequate supply of safe and healthy food of animal origin, and to enhance the healt...", and the only contributor was "Hjmegens" (talk))
  • 13:05, 29 May 2026 Haars0011 talk contribs deleted page Allpathslg 51910 (content was: " '''[http://www.broadinstitute.org/software/allpaths-lg/blog/ ALLPATHS-LG]''' is a popular genome assembler. == Module file == The module file can be found in this location: /cm/shared/modulefiles/SHARED/ <pre> #%Module1.0####################################################################### ## maker ALLPATHS-LG (51910 modulefile ## proc ModulesHelp { } { puts stderr "\tAdds ALLPATHS-LG (51910) to your environment" } module-whatis "Adds ALLPATHS-LG (51910) to...")
  • 13:04, 29 May 2026 Haars0011 talk contribs deleted page Allpathslg 48961 (content was: " '''[http://www.broadinstitute.org/software/allpaths-lg/blog/ ALLPATHS-LG]''' is a popular genome assembler. == Module file == The module file can be found in this location: /cm/shared/modulefiles/SHARED/ <pre> #%Module1.0####################################################################### ## maker ALLPATHS-LG (48961 modulefile ## proc ModulesHelp { } { puts stderr "\tAdds ALLPATHS-LG (48961) to your environment" } module-whatis "Adds ALLPATHS-LG (48961) to...")
  • 13:03, 29 May 2026 Haars0011 talk contribs deleted page About ABGC (content was: "The Animal Breeding and Genomics Centre is a merger of the Animal Breeding & Genetics chair group, of the [http://www.wageningenuniversity.nl/UK/about/organisation/Chair%20groups/animal/ Animal Sciences Group], Wageningen University, and the Genetics and Genomics cluster of the WUR [http://www.livestockresearch.wur.nl/UK/ Livestock Research] Centre. The ABGC has three key...", and the only contributor was "Hjmegens" (talk))
  • 13:03, 29 May 2026 Haars0011 talk contribs deleted page ANGSD 0.614 (content was: "[http://popgen.dk/wiki/index.php/ANGSD ANGSD] ANGSD is a software for analyzing next generation sequencing data. The software can handle a number of different input types from mapped reads to imputed genotype probabilities. Most methods take genotype uncertainty into account instead of basing the analysis on called genotypes. This is especially useful for low and medium dep...", and the only contributor was "Herre011" (talk))
  • 13:03, 29 May 2026 Haars0011 talk contribs deleted page ABGSA (content was: "== Rationale of the ABGSA == == Description of the layout == == Metadata database == Metadatabase name is ABGSAschema +-----------------------+ | Tables_in_ABGSAschema | +-----------------------+ | ABGSAschema_main | | filesize | | fqfile_attributes | | gc_cont | +-----------------------+ The most recent mysqldump file...", and the only contributor was "Hjmegens" (talk))
  • 13:02, 29 May 2026 Haars0011 talk contribs deleted page ABGC secretariat (content was: "== Animal Breeding and Genetics Chair Group == <pre> Visiting Address Zodiac building number 122 De Elst 1 6708 WD, Wageningen Telefax: +31 317 483929 office.abg@wur.nl </pre> == Genetics and Genomics Research Cluster == ===Headquarters Lelystad:=== <pre> Visiting address Edelhertweg 15 8219 PH Lelystad Postal address P.O. Box 65 8200 AB Lelystad tel: +31 320 238 238 fa...", and the only contributor was "Hjmegens" (talk))
  • 13:02, 29 May 2026 Haars0011 talk contribs deleted page ABGC lab (content was: "* protocols", and the only contributor was "Hjmegens" (talk))
  • 13:02, 29 May 2026 Haars0011 talk contribs deleted page ABGC bioinformatics (content was: "The ABGC has several shared bioinformatics facilities. == Bioinformatics at the Animal Breeding and Genetics chairgroup == * Monday Genome Meeting * Bioinformatics: topics * best practices, tips and workflows == Bioinformatics at the Genetics and Genom...", and the only contributor was "Hjmegens" (talk))
  • 13:01, 29 May 2026 Haars0011 talk contribs deleted page 1000Bulls mapping pipeline at ABGC (content was: "The 1000 Bulls mapping pipeline as currently implemented at ABGC is an extension of a generic pipeline developed for pig at ABGC. Modifications include use of bwa 5.9 in stead of later versions, as per the requirements of the 1000 Bulls consortium. Furthermore, the script will automate setting metadata in the BAM files such as including the official 1000 Bulls Ids of the individual cows. Another modification is the use of an sqlite-based database that holds some the metadata re...")
  • 13:00, 29 May 2026 Haars0011 talk contribs deleted page AsAn (content before blanking was: "=== Protocol with typical commands used for de novo assembly and annotation === * Preprocessing * Assembly * Annotation * Submission * Visualization === Preprocessing === === Assembly === === Annotation === === Functional annotation === === Submission === === Other types of analysis ===")
  • 12:50, 29 May 2026 Haars0011 talk contribs deleted page Convert between MediaWiki and other formats (content was: "There are various programs that can convert to and from MediaWiki format, as used in this Wiki, and other formats. This page lists some of them and provides explanation of how to use them. == Pandoc == [http://johnmacfarlane.net/pandoc/demos.html Pandoc] is an open source tool that can convert between different markup styles and languages. There is a [http://johnmacfarlane.net/pandoc/try/ web version of Pandoc] but that seems limited to small documents only. There's also a C...")
  • 12:48, 29 May 2026 Haars0011 talk contribs deleted page New page (content was: "Now here is some stuff", and the only contributor was "Megen002" (talk))
  • 11:11, 11 July 2017 Dawes001 talk contribs deleted page Template:Warning (Author request)
  • 19:43, 4 March 2012 Hjmegens talk contribs deleted page File:Bioinformatics-infra.gif (Deleted old revision 20120304194236!Bioinformatics-infra.gif: updated picture)
  • 08:53, 25 November 2011 Hjmegens talk contribs deleted page File:Logo.gif
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