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• 13:10, 29 May 2026 Haars0011 talk contribs deleted page Command line tricks for manipulating fastq (content was: "== Extracting a sequence based on read name == <source lang='bash'> gunzip -c reads.fq.gz | sed -n '/readname/,+3 p' </source> == From BAM/SAM to fastq == <source lang='bash'> samtools view bamfile.bam | grep -v '^@' | awk '{print "@"$1"\n"$10"\n+\n"$11}' </source> == From fastq to fasta == <source lang='bash'> gunzip -c fastqfile.fq.gz | sed 's/^@/>/' | awk '{print;get...", and the only contributor was "Megen002" (talk))