User contributions for Megen002

20 December 2013

• 11:1511:15, 20 December 2013 diff hist 0‎ File:HJM.jpg ‎ Megen002 uploaded a new version of "File:HJM.jpg" current
• 11:1511:15, 20 December 2013 diff hist 0‎ File:HJM.jpg ‎ Megen002 uploaded a new version of "File:HJM.jpg"
• 11:1311:13, 20 December 2013 diff hist 0‎ N File:HJM.jpg ‎No edit summary
• 11:1111:11, 20 December 2013 diff hist +101‎ User:Megen002 ‎ →‎Hendrik-Jan Megens
• 01:2501:25, 20 December 2013 diff hist +18‎ List of users ‎No edit summary
• 01:2501:25, 20 December 2013 diff hist +45‎ List of users ‎No edit summary

13 December 2013

• 00:2300:23, 13 December 2013 diff hist +285‎ N Obfuscating runs ‎ Created page with "<source lang='bash'> #!/bin/bash #SBATCH --exclusive #SBATCH --nodes=1 #SBATCH --mem=10000 #SBATCH --comment="cv testjob" #SBATCH -p student RND=`< /dev/urandom tr -dc _A-Z-a..." current

12 December 2013

• 23:4023:40, 12 December 2013 diff hist +38‎ MPI on B4F cluster ‎No edit summary
• 23:3923:39, 12 December 2013 diff hist +581‎ MPI on B4F cluster ‎No edit summary
• 23:3423:34, 12 December 2013 diff hist 0‎ MPI on B4F cluster ‎No edit summary
• 23:3323:33, 12 December 2013 diff hist +2‎ MPI on B4F cluster ‎No edit summary
• 23:3223:32, 12 December 2013 diff hist +612‎ MPI on B4F cluster ‎No edit summary
• 23:3023:30, 12 December 2013 diff hist +1,189‎ N MPI on B4F cluster ‎ Created page with " module list module purge module load gcc/4.8.1 openmpi/gcc/64/1.6.5 slurm/2.5.7 mpicc hello_mpi.c -o test_hello_world ldd test_hello_world linux-vdso.so.1 => (0x00002a..."
• 23:2323:23, 12 December 2013 diff hist +59‎ Using Slurm ‎ →‎Running MPI jobs on B4F cluster
• 23:1823:18, 12 December 2013 diff hist +64‎ Using Slurm ‎ →‎See also

11 December 2013

• 12:3612:36, 11 December 2013 diff hist −69‎ User:Megen002 ‎No edit summary
• 00:3500:35, 11 December 2013 diff hist +508‎ Using environment modules ‎No edit summary
• 00:3100:31, 11 December 2013 diff hist +829‎ N Using environment modules ‎ Created page with "<-- this is only preliminary text; this article needs more work --> === Example === Consider this simple python3 script that should calculate Pi to 1 million digits: <source ..."
• 00:2900:29, 11 December 2013 diff hist −2‎ Using Slurm ‎ →‎Query a specific active job: scontrol

9 December 2013

• 00:5100:51, 9 December 2013 diff hist +124‎ List of users ‎No edit summary
• 00:4900:49, 9 December 2013 diff hist +46‎ N List of users ‎ Created page with " Hendrik-Jan Megens (ABGC)"
• 00:4900:49, 9 December 2013 diff hist −35‎ Main Page ‎ →‎Management
• 00:4800:48, 9 December 2013 diff hist +94‎ Main Page ‎ →‎User Group
• 00:4700:47, 9 December 2013 diff hist 0‎ Main Page ‎ →‎Animal Breeding and Genetics
• 00:4600:46, 9 December 2013 diff hist +5‎ Main Page ‎ →‎IT Workgroup
• 00:4300:43, 9 December 2013 diff hist +15‎ Main Page ‎ →‎IT Workgroup
• 00:1800:18, 9 December 2013 diff hist −236‎ Bioinformatics tips tricks workflows ‎ →‎A list of tutorials, workflows, and recipes

8 December 2013

• 15:4815:48, 8 December 2013 diff hist +17‎ Main Page ‎ →‎External links
• 15:4715:47, 8 December 2013 diff hist +66‎ Main Page ‎ →‎External links
• 15:4315:43, 8 December 2013 diff hist +218‎ Main Page ‎ →‎Nodes
• 15:4015:40, 8 December 2013 diff hist +47‎ Main Page ‎ →‎Nodes
• 15:0115:01, 8 December 2013 diff hist +32‎ Setting local variables ‎ →‎Adding custom directories to the system PATH
• 15:0015:00, 8 December 2013 diff hist +30‎ Setting local variables ‎ →‎Increase number of commands remembered in the history
• 15:0015:00, 8 December 2013 diff hist +331‎ Setting local variables ‎ →‎Modify .bashrc and .bash_profile
• 14:5614:56, 8 December 2013 diff hist +90‎ Main Page ‎ →‎Using the B4F Cluster
• 14:5514:55, 8 December 2013 diff hist +161‎ Main Page ‎ →‎Using the B4F Cluster
• 14:5414:54, 8 December 2013 diff hist +397‎ Setting TMPDIR ‎No edit summary
• 14:4914:49, 8 December 2013 diff hist +134‎ Setting TMPDIR ‎No edit summary
• 14:4714:47, 8 December 2013 diff hist +599‎ Setting TMPDIR ‎No edit summary
• 14:4314:43, 8 December 2013 diff hist +693‎ Setting TMPDIR ‎No edit summary
• 14:3714:37, 8 December 2013 diff hist +155‎ N Setting TMPDIR ‎ Created page with " <source lang='bash'> mkdir /lustre/scratch/WUR/ABGC/[user]/tmp </source> <source lang='bash'> export TMPDIR=/lustre/scratch/WUR/ABGC/[user]/tmp </source>"
• 14:3614:36, 8 December 2013 diff hist +118‎ Main Page ‎ →‎Using the B4F Cluster
• 14:2714:27, 8 December 2013 diff hist +4‎ User:Megen002 ‎ →‎Hendrik-Jan Megens
• 14:2714:27, 8 December 2013 diff hist +81‎ User:Megen002 ‎No edit summary
• 14:1614:16, 8 December 2013 diff hist +26‎ User:Megen002 ‎No edit summary
• 14:1614:16, 8 December 2013 diff hist +1,747‎ N User:Megen002 ‎ Created page with "Profile on [http://www.linkedin.com/pub/hendrik-jan-megens/24/536/2b8 LinkedIn] Senior Researcher and lecturer at Wageningen University, Animal Breeding and Genomics Centre. ..."
• 12:2512:25, 8 December 2013 diff hist +566‎ N Command line tricks for manipulating fastq ‎ Created page with "== Extracting a sequence based on read name == <source lang='bash'> gunzip -c reads.fq.gz | sed -n '/readname/,+3 p' </source> == From BAM/SAM to fastq == <source lang='bas..." current
• 12:2512:25, 8 December 2013 diff hist +1,195‎ N Bioinformatics tips tricks workflows ‎ Created page with "This page is intended as a portal to pages concerning best practices, workflows and pipelines, and other protocols (including scripts). == A list of tutorials, workflows, and..."
• 12:2312:23, 8 December 2013 diff hist +109‎ Main Page ‎ →‎Using the B4F Cluster
• 12:2212:22, 8 December 2013 diff hist +88‎ Installing R packages locally ‎ →‎See also