Control R environment using modules: Difference between revisions
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<source lang='tcl'> | <source lang='tcl'> | ||
#%Module1.0####################################################################### | #%Module1.0####################################################################### | ||
## R3 modulefile | ## R3 modulefile modified for WUR/ABGC use | ||
## | ## | ||
proc ModulesHelp { } { | proc ModulesHelp { } { | ||
puts stderr "\tAdds R v3.0.2 to your environment" | puts stderr "\tAdds R v3.0.2 to your environment and sets WUR/ABGC libraries" | ||
} | } | ||
module-whatis "Adds R v3.0.2 to your environment" | module-whatis "Adds R v3.0.2 to your environment and set WUR/ABGC libraries" | ||
set r3_root /cm/shared/apps/R3/ | set r3_root /cm/shared/apps/R3/ | ||
| Line 29: | Line 29: | ||
prepend-path LD_LIBRARY_PATH $r3_root/lib64 | prepend-path LD_LIBRARY_PATH $r3_root/lib64 | ||
prepend-path R_LIBS_SITE $r3_wur_root | prepend-path R_LIBS_SITE $r3_wur_root | ||
</source> | </source> | ||
Revision as of 23:50, 29 November 2013
<source lang='bash'> /cm/shared/apps/WUR/ABGC/R/R_libraries/3.0.2/ </source>
<source lang='bash'> mkdir /cm/shared/apps/WUR/ABGC/modulefiles/R/ </source>
<source lang='bash'> cp /cm/shared/modulefiles/R/3.0.2 /cm/shared/apps/WUR/ABGC/modulefiles/R/3.0.2_wur </source>
<source lang='tcl'>
- %Module1.0#######################################################################
- R3 modulefile modified for WUR/ABGC use
proc ModulesHelp { } {
puts stderr "\tAdds R v3.0.2 to your environment and sets WUR/ABGC libraries"
}
module-whatis "Adds R v3.0.2 to your environment and set WUR/ABGC libraries"
set r3_root /cm/shared/apps/R3/ set r3_wur_root /cm/shared/apps/WUR/ABGC/R/R_libraries/3.0.2/
prepend-path PATH $r3_root/bin prepend-path MANPATH $r3_root/share/man prepend-path LD_LIBRARY_PATH $r3_root/lib64 prepend-path R_LIBS_SITE $r3_wur_root
</source>
----------------------------------- /cm/shared/apps/WUR/ABGC/modulefiles ----------------------------------- bwa/0.5.9 bwa/0.7.5a R/3.0.2_wur
<source lang='rsplus'> install.packages('car') </source>
> installed.packages()
Package LibPath
car "car" "/cm/shared/apps/WUR/ABGC/R/R_libraries/3.0.2"