Workflows: Difference between revisions
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Replace performance optimizations with Parallel Workflows |
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=== Parallel Workflows === | === Parallel Workflows === | ||
* [[Performance Optimization/Multiple CPUs]] — using several cores in one job | * Types of Parallel Workflows | ||
* [[Performance Optimization/Multiple nodes (MPI)]] — scaling across nodes with MPI | * Embarrassingly Parallel - Array jobs | ||
* [[Performance Optimization/Multiple nodes (arrayjobs)]] — scaling with job arrays | * Multi-threaded Workflows | ||
* Multi-Process Workflows | |||
* Hybrid Workflows | |||
* <s>[[Performance Optimization/Multiple CPUs]] — using several cores in one job</s> | |||
* <s>[[Performance Optimization/Multiple nodes (MPI)]] — scaling across nodes with MPI</s> | |||
* <s>[[Performance Optimization/Multiple nodes (arrayjobs)]] — scaling with job arrays</s> | |||
Revision as of 11:52, 23 July 2026
Guidelines and tools for building reproducible, efficient research workflows on Anunna.
In this section
- Workflow Migration from Laptop to HPC — moving your work to the cluster
- Reproducibility Guidelines — keeping your work reproducible
- Workflow Engines (Snakemake, Nextflow) — managing multi-step pipelines
- Debugging Jobs — working out why a job failed
- Checkpointing — saving and restarting long jobs
- Scheduled tasks (cron) — running recurring tasks with scrontab
Parallel Workflows
- Types of Parallel Workflows
- Embarrassingly Parallel - Array jobs
- Multi-threaded Workflows
- Multi-Process Workflows
- Hybrid Workflows
Performance Optimization/Multiple CPUs — using several cores in one jobPerformance Optimization/Multiple nodes (MPI) — scaling across nodes with MPIPerformance Optimization/Multiple nodes (arrayjobs) — scaling with job arrays