JBrowse: Difference between revisions

From HPCwiki
Jump to navigation Jump to search
Line 4: Line 4:


* JBrowse is available for multiple species:
* JBrowse is available for multiple species:
- https://jbrowse.hpcagrogenomics.wur.nl/pig/
** https://jbrowse.hpcagrogenomics.wur.nl/pig/


- https://jbrowse.hpcagrogenomics.wur.nl/chicken/
** https://jbrowse.hpcagrogenomics.wur.nl/chicken/


- https://jbrowse.hpcagrogenomics.wur.nl/cattle/
** https://jbrowse.hpcagrogenomics.wur.nl/cattle/


- https://jbrowse.hpcagrogenomics.wur.nl/turkey/
** https://jbrowse.hpcagrogenomics.wur.nl/turkey/


* Users are free to add usefull commands to this tutorial
* Users are free to add usefull commands to this tutorial

Revision as of 09:50, 27 January 2016

Typical commands used to set up a JBrowse

Author: Martijn Derks

  • Users are free to add usefull commands to this tutorial
  • Use case in wintermoth. 12 samples (1 Egg, 1 Caterpillar, 3x3 Pupa, 1 Moth).

Trim sequences for quality and adapters