JBrowse: Difference between revisions

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(Created page with "=== Typical commands used to set up a JBrowse === Author: Martijn Derks * JBrowse is available for multiple species: - https://jbrowse.hpcagrogenomics.wur.nl/pig/ - https:/...")
 
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* JBrowse is available for multiple species:
* JBrowse is available for multiple species:
- https://jbrowse.hpcagrogenomics.wur.nl/pig/
- https://jbrowse.hpcagrogenomics.wur.nl/pig/
- https://jbrowse.hpcagrogenomics.wur.nl/chicken/
- https://jbrowse.hpcagrogenomics.wur.nl/chicken/
- https://jbrowse.hpcagrogenomics.wur.nl/cattle/
- https://jbrowse.hpcagrogenomics.wur.nl/cattle/
- https://jbrowse.hpcagrogenomics.wur.nl/turkey/
- https://jbrowse.hpcagrogenomics.wur.nl/turkey/



Revision as of 09:48, 27 January 2016

Typical commands used to set up a JBrowse

Author: Martijn Derks

  • JBrowse is available for multiple species:

- https://jbrowse.hpcagrogenomics.wur.nl/pig/

- https://jbrowse.hpcagrogenomics.wur.nl/chicken/

- https://jbrowse.hpcagrogenomics.wur.nl/cattle/

- https://jbrowse.hpcagrogenomics.wur.nl/turkey/

  • Users are free to add usefull commands to this tutorial
  • Use case in wintermoth. 12 samples (1 Egg, 1 Caterpillar, 3x3 Pupa, 1 Moth).

Trim sequences for quality and adapters