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| Anunna is a [http://en.wikipedia.org/wiki/High-performance_computing High Performance Computer] (HPC) infrastructure hosted by [https://www.wur.nl/en/show/supercomputer-anunna-opens-up-more-opportunities-for-data-storage-and-artificial-intelligence-applications.htm Wageningen University & Research Centre]. It is open for use for all WUR research groups as well as other organizations, including companies, that have collaborative projects with WUR. | | Anunna is a [http://en.wikipedia.org/wiki/High-performance_computing High Performance Computing] (HPC) cluster hosted by [https://www.wur.nl/ Wageningen University & Research]. It is open to all WUR research groups, and to other organisations and companies running collaborative projects with WUR. |
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| = About =
| | You reach the cluster over [[SSH Access|SSH]] at <code>login.anunna.wur.nl</code>, or through your browser at the [[Apps Portal]] (https://apps.anunna.wur.nl/). |
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| * [[History of the Cluster|Historical information on the startup of Anunna]]
| | == Documentation == |
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| == Access Policy == | | === Start here === |
| [[Access_Policy | Main Article: Access Policy]]
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| Access needs to be granted actively (by creation of an account on the cluster by FB-IT). Use of resources is limited by the scheduler. Note that the use of Anunna is not free of charge.
| | * [[About]] — what Anunna is, how it is built and run, and the policies that apply |
| | * [[Get Started]] — eligibility, getting an account, and logging in |
| | * [[Glossary of Terms]] — common HPC and Anunna terms explained |
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| = Our Courses and Tutorials = | | === Using the cluster === |
| The Anunna team organizes HPC courses three times a year to strengthen basic & more advanced skills and enable users to make the most effective use of our facility.
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| * [[Linux Basic]] | | * [[System Access]] — login and compute nodes, filesystems, data transfer |
| * [[HPC Basic]] | | * [[Scheduling]] — submitting and managing jobs with SLURM |
| * [[HPC Advanced]] | | * [[Software]] — modules, languages, containers, and licensed software |
| * [[2026 Course dates]] | | * [[Storage]] — the storage tiers and how data is kept and protected |
| * [[Tutorials]] | | * [[Apps Portal]] — graphical applications and desktops in your browser |
| | * [[Workflows]] — reproducible, efficient research workflows |
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| = Using Anunna = | | === Help and more === |
| * [[Tariffs |Costs associated with resource usage]]
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| == Getting support ==
| | * [[Training]] — courses, tutorials, and reference material |
| * [[Support|Get support with using Anunna (open a ticket with the HPC team)]] | | * [[Support]] — getting help, reporting problems, and cluster status |
| | * [[For PIs]] — projects, allocations, and group management for group leaders |
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| == Gaining access to Anunna== | | == Quick links == |
| Access to the cluster and file transfer are traditionally done via [http://en.wikipedia.org/wiki/Secure_Shell SSH and SFTP].
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| * [[log_in_to_B4F_cluster | Logging into cluster using ssh]]
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| * [[file_transfer | File transfer options]]
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| * [[Services | Alternative access methods, and extra features and services on Anunna]]
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| * [[Filesystems | Data storage methods on Anunna]]
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| == Using Anunna for courses (mainly jupyter notebooks) ==
| | * [[How to Get Help]] — contact the HPC team |
| * [[steps_for_courses | Steps involved to run a course on Anunna]] | | * [[Tariffs]] — costs of using Anunna |
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| | * [[Maintenance Schedule]] — planned downtimes |
| = Events =
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| * [[Courses]] that have happened and are happening
| | == External links == |
| * [[Downtime]] that will affect all users
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| * [[Meetings]] that may affect the policies of Anunna
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| = Software =
| | * [https://www.wur.nl/en/Value-Creation-Cooperation/Facilities/Wageningen-Shared-Research-Facilities/Our-facilities/Show/High-Performance-Computing-Cluster-HPC-Anunna.htm Wageningen Shared Research Facilities — HPC] |
| * [[Modules]]
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| * [[Apptainer]]
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| * [[Python]]
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| * [[R]]
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| * [[Julia]]
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| == Browser apps ==
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| This page provides an overview of the GUI-based applications available Anunna, including background information and practical guidance on how to access and use interactive desktops and graphical tools directly from your web browser.
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| * [[General overview|General Overview]]
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| * [[Anunna Shell Access]]
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| * [[Using the File browser|File Browser]]
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| * [[Jupyter]]
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| * [[RStudio|R Studio]]
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| * [[Linux desktop|Linux Desktop]]
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| * [[Requesting new software|Requesting New Software]]
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| == Command-line Software ==
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| ==== Cluster Scheduler ====
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| Anunna uses Slurm as job scheduler.
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| * [[Using_Slurm | Submit jobs with Slurm]]
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| * [[node_usage_graph | Be aware of how much work the cluster is under right now with 'node_usage_graph']]
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| * [[SLURM_Compare | Rosetta Stone of Workload Managers]]
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| ==== [[Globally installed software]] ====
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| ==== [[ABGC_modules |ABGC specific modules]] ====
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| ==== Installation of software by users ====
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| * [[Domain_specific_software_on_B4Fcluster_installation_by_users | Installing domain specific software: installation by users]]
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| * [[Setting local variables]]
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| * [[Installing_R_packages_locally | Installing R packages locally]]
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| * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]
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| * [[Virtual_environment_Python_3.4_or_higher | Setting up and using a virtual environment for Python3.4 or higher ]]
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| * [[Installing WRF and WPS]]
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| * [[Running scripts on a fixed timeschedule (cron)]]
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| = Useful Notes =
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| == Being in control of Environment parameters ==
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| * [[Using_environment_modules | Using environment modules]]
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| * [[Aliases and local variables]]
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| * [[Setting local variables]]
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| * [[Setting_TMPDIR | Set a custom temporary directory location]]
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| * [[Installing_R_packages_locally | Installing R packages locally]]
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| * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]
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| * [[Locale_settings]] (how numbers and dates are displayed)
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| == Controlling costs ==
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| * [[SACCT | using SACCT to see your costs]]
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| * [[get_my_bill | using the "get_my_bill" script to estimate costs]]
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| == Management ==
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| Product Owner of Anunna is Alexander van Ittersum (Wageningen UR,FB-IT, C&PS). [[User: prins089 | Fons Prinsen (Wageningen UR, FB-IT, C&PS)]] is responsible for [[Maintenance_and_Management | Maintenance and Management]] of the cluster.
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| * [[Roadmap | Ambitions regarding innovation, support and administration of Anunna ]]
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| = Miscellaneous =
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| * [[Bioinformatics_tips_tricks_workflows |Bioinformatics tips, tricks, and workflows]]
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| * [[Parallel_R_code_on_SLURM | Running parallel R code on SLURM]]
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| * [[Convert_between_MediaWiki_and_other_formats | Convert between MediaWiki format and other formats]]
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| * [[Manual GitLab | GitLab: Create projects and add scripts]]
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| * [[Monitoring_executions | Monitoring job execution]]
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| * [[Shared_folders | Working with shared folders in the Lustre file system]]
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| * [[Old_binaries | Running older binaries on the updated OS]]
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| * [[locale_settings | How to change language settings for yourself]]
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| = See also =
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| * [[Maintenance_and_Management | Maintenance and Management]]
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| * [[About_ABGC | About ABGC]]
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| * [[Computer_cluster | High Performance Computing @ABGC]]
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| * [[Lustre_PFS_layout | Lustre Parallel File System layout]]
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| = External links =
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| * [https://www.wur.nl/en/Value-Creation-Cooperation/Facilities/Wageningen-Shared-Research-Facilities/Our-facilities/Show/High-Performance-Computing-Cluster-HPC-Anunna.htm SRF offers a HPC facilty] | |
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| * [http://en.wikipedia.org/wiki/Scientific_Linux Scientific Linux]
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| * [http://en.wikipedia.org/wiki/Help:Cheatsheet Help with editing Wiki pages]
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| |}
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