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Phase 0 cleanup: remove dead links (P0.1) — drop Services, Downtime, Globally installed software heading, Domain specific software on B4Fcluster, Lustre PFS layout, Bioinformatics tips tricks workflows, Manual GitLab; redirect old log_in_to_B4F_cluster ref to Log in to Anunna (via update-page on MediaWiki MCP Server) |
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Access needs to be granted actively (by creation of an account on the cluster by FB-IT). Use of resources is limited by the scheduler. Note that the use of Anunna is not free of charge. | Access needs to be granted actively (by creation of an account on the cluster by FB-IT). Use of resources is limited by the scheduler. Note that the use of Anunna is not free of charge. | ||
= Our Courses = | = Our Courses and Tutorials = | ||
The Anunna team organizes HPC courses three times a year to strengthen basic & more advanced skills and enable users to make the most effective use of our facility. | The Anunna team organizes HPC courses three times a year to strengthen basic & more advanced skills and enable users to make the most effective use of our facility. | ||
* [[Linux Basic]] | |||
* [[HPC Basic]] | |||
* [[HPC Advanced]] | |||
* [[2026 Course dates]] | |||
* [[Tutorials]] | |||
= | = Using Anunna = | ||
* [[Tariffs |Costs associated with resource usage]] | |||
= | == Getting support == | ||
* [[ | * [[Support|Get support with using Anunna (open a ticket with the HPC team)]] | ||
== Gaining access to Anunna== | == Gaining access to Anunna== | ||
Access to the cluster and file transfer are traditionally done via [http://en.wikipedia.org/wiki/Secure_Shell SSH and SFTP]. | Access to the cluster and file transfer are traditionally done via [http://en.wikipedia.org/wiki/Secure_Shell SSH and SFTP]. | ||
* [[ | * [[Log_in_to_Anunna | Logging into cluster using ssh]] | ||
* [[file_transfer | File transfer options]] | * [[file_transfer | File transfer options]] | ||
* [[Filesystems | Data storage methods on Anunna]] | * [[Filesystems | Data storage methods on Anunna]] | ||
| Line 37: | Line 37: | ||
* [[Courses]] that have happened and are happening | * [[Courses]] that have happened and are happening | ||
* [[Meetings]] that may affect the policies of Anunna | * [[Meetings]] that may affect the policies of Anunna | ||
| Line 47: | Line 46: | ||
* [[Julia]] | * [[Julia]] | ||
== Browser | == Browser apps == | ||
This page provides an overview of the GUI-based applications available Anunna, including background information and practical guidance on how to access and use interactive desktops and graphical tools directly from your web browser. | |||
* [[General overview|General Overview]] | |||
* [[Anunna Shell Access]] | |||
* [[Using the File browser|File Browser]] | |||
* [[Jupyter]] | |||
* [[RStudio|R Studio]] | |||
* [[Linux desktop|Linux Desktop]] | |||
* [[Requesting new software|Requesting New Software]] | |||
== | == Command-line Software == | ||
==== Cluster Scheduler ==== | ==== Cluster Scheduler ==== | ||
| Line 63: | Line 63: | ||
* [[Using_Slurm | Submit jobs with Slurm]] | * [[Using_Slurm | Submit jobs with Slurm]] | ||
* [[node_usage_graph | Be aware of how much work the cluster is under right now with 'node_usage_graph']] | * [[node_usage_graph | Be aware of how much work the cluster is under right now with 'node_usage_graph']] | ||
==== [[ABGC_modules |ABGC specific modules]] ==== | ==== [[ABGC_modules |ABGC specific modules]] ==== | ||
==== Installation of software by users ==== | ==== Installation of software by users ==== | ||
* [[Setting local variables]] | * [[Setting local variables]] | ||
* [[Installing_R_packages_locally | Installing R packages locally]] | * [[Installing_R_packages_locally | Installing R packages locally]] | ||
* [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]] | * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]] | ||
* [[Virtual_environment_Python_3.4_or_higher | Setting up and using a virtual environment for Python3.4 or higher ]] | * [[Virtual_environment_Python_3.4_or_higher | Setting up and using a virtual environment for Python3.4 or higher ]] | ||
* [[Running scripts on a fixed timeschedule (cron)]] | * [[Running scripts on a fixed timeschedule (cron)]] | ||
| Line 101: | Line 96: | ||
= Miscellaneous = | = Miscellaneous = | ||
* [[Parallel_R_code_on_SLURM | Running parallel R code on SLURM]] | * [[Parallel_R_code_on_SLURM | Running parallel R code on SLURM]] | ||
* [[Monitoring_executions | Monitoring job execution]] | * [[Monitoring_executions | Monitoring job execution]] | ||
* [[Shared_folders | Working with shared folders in the Lustre file system]] | * [[Shared_folders | Working with shared folders in the Lustre file system]] | ||
| Line 112: | Line 104: | ||
= See also = | = See also = | ||
* [[Maintenance_and_Management | Maintenance and Management]] | * [[Maintenance_and_Management | Maintenance and Management]] | ||
= External links = | = External links = | ||
Latest revision as of 08:37, 16 June 2026
Anunna is a High Performance Computer (HPC) infrastructure hosted by Wageningen University & Research Centre. It is open for use for all WUR research groups as well as other organizations, including companies, that have collaborative projects with WUR.
About
Access Policy
Access needs to be granted actively (by creation of an account on the cluster by FB-IT). Use of resources is limited by the scheduler. Note that the use of Anunna is not free of charge.
Our Courses and Tutorials
The Anunna team organizes HPC courses three times a year to strengthen basic & more advanced skills and enable users to make the most effective use of our facility.
Using Anunna
Getting support
Gaining access to Anunna
Access to the cluster and file transfer are traditionally done via SSH and SFTP.
Using Anunna for courses (mainly jupyter notebooks)
Events
Software
Browser apps
This page provides an overview of the GUI-based applications available Anunna, including background information and practical guidance on how to access and use interactive desktops and graphical tools directly from your web browser.
- General Overview
- Anunna Shell Access
- File Browser
- Jupyter
- R Studio
- Linux Desktop
- Requesting New Software
Command-line Software
Cluster Scheduler
Anunna uses Slurm as job scheduler.
- Submit jobs with Slurm
- Be aware of how much work the cluster is under right now with 'node_usage_graph'
Installation of software by users
- Setting local variables
- Installing R packages locally
- Setting up and using a virtual environment for Python3
- Setting up and using a virtual environment for Python3.4 or higher
- Running scripts on a fixed timeschedule (cron)
Useful Notes
Being in control of Environment parameters
- Using environment modules
- Aliases and local variables
- Setting local variables
- Set a custom temporary directory location
- Installing R packages locally
- Setting up and using a virtual environment for Python3
- Locale_settings (how numbers and dates are displayed)
Controlling costs
Management
Product Owner of Anunna is Alexander van Ittersum (Wageningen UR,FB-IT, C&PS). Fons Prinsen (Wageningen UR, FB-IT, C&PS) is responsible for Maintenance and Management of the cluster.
Miscellaneous
- Running parallel R code on SLURM
- Monitoring job execution
- Working with shared folders in the Lustre file system
- Running older binaries on the updated OS
- How to change language settings for yourself