|
|
| (43 intermediate revisions by 5 users not shown) |
| Line 1: |
Line 1: |
| Anunna is a [http://en.wikipedia.org/wiki/High-performance_computing High Performance Computer] (HPC) infrastructure hosted by [https://www.wur.nl/en/show/supercomputer-anunna-opens-up-more-opportunities-for-data-storage-and-artificial-intelligence-applications.htm Wageningen University & Research Centre]. It is open for use for all WUR research groups as well as other organizations, including companies, that have collaborative projects with WUR. | | Anunna is a [http://en.wikipedia.org/wiki/High-performance_computing High Performance Computing] (HPC) cluster hosted by [https://www.wur.nl/ Wageningen University & Research]. It is open to all WUR research groups, and to other organisations and companies running collaborative projects with WUR. |
|
| |
|
| == Access Policy ==
| | You reach the cluster over [[SSH Access|SSH]] at <code>login.anunna.wur.nl</code>, or through your browser at the [[Apps Portal]] (https://apps.anunna.wur.nl/). |
| [[Access_Policy | Main Article: Access Policy]] | |
|
| |
|
| Access needs to be granted actively (by creation of an account on the cluster by FB-IT). Use of resources is limited by the scheduler. Note that the use of Anunna is not free of charge.
| | == Documentation == |
|
| |
|
| = Using Anunna = | | === Start here === |
| * [[Tariffs | Costs associated with resource usage]]
| |
|
| |
|
| == Gaining access to Anunna==
| | * [[About]] — what Anunna is, how it is built and run, and the policies that apply |
| Access to the cluster and file transfer are traditionally done via [http://en.wikipedia.org/wiki/Secure_Shell SSH and SFTP].
| | * [[Get Started]] — eligibility, getting an account, and logging in |
| * [[log_in_to_B4F_cluster | Logging into cluster using ssh]] | | * [[Glossary of Terms]] — common HPC and Anunna terms explained |
| * [[file_transfer | File transfer options]] | |
| * [[Services | Alternative access methods, and extra features and services on Anunna]]
| |
| * [[Filesystems | Data storage methods on Anunna]] | |
|
| |
|
| = Events = | | === Using the cluster === |
|
| |
|
| * [[Courses]] that have happened and are happening | | * [[System Access]] — login and compute nodes, filesystems, data transfer |
| * [[Downtime]] that will affect all users | | * [[Scheduling]] — submitting and managing jobs with SLURM |
| * [[Meetings]] that may affect the policies of Anunna | | * [[Software]] — modules, languages, containers, and licensed software |
| | * [[Storage]] — the storage tiers and how data is kept and protected |
| | * [[Apps Portal]] — graphical applications and desktops in your browser |
| | * [[Workflows]] — reproducible, efficient research workflows |
|
| |
|
| = Software = | | === Help and more === |
| * [[Modules]]
| |
| * [[Apptainer]]
| |
| * [[Python]]
| |
| * [[R]]
| |
| * [[Julia]]
| |
|
| |
|
| =Web Apps=
| | * [[Training]] — courses, tutorials, and reference material |
| | * [[Support]] — getting help, reporting problems, and cluster status |
| | * [[For PIs]] — projects, allocations, and group management for group leaders |
|
| |
|
| *[[Jupyter]]
| | == Quick links == |
|
| |
|
| = Other Software =
| | * [[How to Get Help]] — contact the HPC team |
| | * [[Tariffs]] — costs of using Anunna |
| | * [[Maintenance Schedule]] — planned downtimes |
|
| |
|
| == Cluster Scheduler == | | == External links == |
| Anunna uses Slurm as job scheduler.
| |
| * [[Using_Slurm | Submit jobs with Slurm]]
| |
| * [[node_usage_graph | Be aware of how much work the cluster is under right now with 'node_usage_graph']]
| |
| * [[SLURM_Compare | Rosetta Stone of Workload Managers]]
| |
|
| |
|
| == Installation of software by users ==
| | * [https://www.wur.nl/en/Value-Creation-Cooperation/Facilities/Wageningen-Shared-Research-Facilities/Our-facilities/Show/High-Performance-Computing-Cluster-HPC-Anunna.htm Wageningen Shared Research Facilities — HPC] |
| | |
| * [[Domain_specific_software_on_B4Fcluster_installation_by_users | Installing domain specific software: installation by users]]
| |
| * [[Setting local variables]]
| |
| * [[Installing_R_packages_locally | Installing R packages locally]]
| |
| * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]
| |
| * [[Virtual_environment_Python_3.4_or_higher | Setting up and using a virtual environment for Python3.4 or higher ]]
| |
| * [[Installing WRF and WPS]]
| |
| * [[Running scripts on a fixed timeschedule (cron)]]
| |
| | |
| == Installed software ==
| |
| | |
| * [[Globally_installed_software | Globally installed software]]
| |
| * [[ABGC_modules | ABGC specific modules]]
| |
| | |
| = Useful Notes =
| |
| | |
| == Being in control of Environment parameters ==
| |
| | |
| * [[Using_environment_modules | Using environment modules]]
| |
| * [[Setting local variables]]
| |
| * [[Setting_TMPDIR | Set a custom temporary directory location]]
| |
| * [[Installing_R_packages_locally | Installing R packages locally]]
| |
| * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]
| |
| | |
| == Controlling costs ==
| |
| | |
| * [[SACCT | using SACCT to see your costs]]
| |
| * [[get_my_bill | using the "get_my_bill" script to estimate costs]]
| |
| | |
| == Management ==
| |
| Product Owner of Anunna is Alexander van Ittersum (Wageningen UR,FB-IT, C&PS). [[User: prins089 | Fons Prinsen (Wageningen UR, FB-IT, C&PS)]] is responsible for [[Maintenance_and_Management | Maintenance and Management]] of the cluster.
| |
| | |
| * [[Roadmap | Ambitions regarding innovation, support and administration of Anunna ]]
| |
| | |
| = Miscellaneous =
| |
| * [[Mailinglist | Electronic mail discussion lists]]
| |
| * [[History_of_the_Cluster | Historical information on the startup of Anunna]]
| |
| * [[Bioinformatics_tips_tricks_workflows | Bioinformatics tips, tricks, and workflows]]
| |
| * [[Parallel_R_code_on_SLURM | Running parallel R code on SLURM]]
| |
| * [[Convert_between_MediaWiki_and_other_formats | Convert between MediaWiki format and other formats]]
| |
| * [[Manual GitLab | GitLab: Create projects and add scripts]]
| |
| * [[Monitoring_executions | Monitoring job execution]]
| |
| * [[Shared_folders | Working with shared folders in the Lustre file system]]
| |
| * [[Old_binaries | Running older binaries on the updated OS]]
| |
| | |
| = See also =
| |
| * [[Maintenance_and_Management | Maintenance and Management]]
| |
| * [[BCData | BCData]]
| |
| * [[Mailinglist | Electronic mail discussion lists]]
| |
| * [[About_ABGC | About ABGC]]
| |
| * [[Computer_cluster | High Performance Computing @ABGC]]
| |
| * [[Lustre_PFS_layout | Lustre Parallel File System layout]]
| |
| | |
| = External links =
| |
| {| width="90%"
| |
| |- valign="top"
| |
| | width="30%" |
| |
| * [https://www.wur.nl/en/Value-Creation-Cooperation/Facilities/Wageningen-Shared-Research-Facilities/Our-facilities/Show/High-Performance-Computing-Cluster-HPC-Anunna.htm SRF offers a HPC facilty] | |
| | width="30%" |
| |
| * [http://en.wikipedia.org/wiki/Scientific_Linux Scientific Linux]
| |
| * [http://en.wikipedia.org/wiki/Help:Cheatsheet Help with editing Wiki pages]
| |
| |}
| |
Anunna is a High Performance Computing (HPC) cluster hosted by Wageningen University & Research. It is open to all WUR research groups, and to other organisations and companies running collaborative projects with WUR.
You reach the cluster over SSH at login.anunna.wur.nl, or through your browser at the Apps Portal (https://apps.anunna.wur.nl/).
Documentation
Start here
- About — what Anunna is, how it is built and run, and the policies that apply
- Get Started — eligibility, getting an account, and logging in
- Glossary of Terms — common HPC and Anunna terms explained
Using the cluster
- System Access — login and compute nodes, filesystems, data transfer
- Scheduling — submitting and managing jobs with SLURM
- Software — modules, languages, containers, and licensed software
- Storage — the storage tiers and how data is kept and protected
- Apps Portal — graphical applications and desktops in your browser
- Workflows — reproducible, efficient research workflows
Help and more
- Training — courses, tutorials, and reference material
- Support — getting help, reporting problems, and cluster status
- For PIs — projects, allocations, and group management for group leaders
Quick links
External links