Megen002: /* Module file */

2014-03-17T21:39:10Z

Module file

← Older revision		Revision as of 23:39, 17 March 2014
Line 23:		Line 23:

	</source>		</source>

			Package was downloaded as pre-compiled binaries for Centos-64bit
			http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/2.3.4-2/sratoolkit.2.3.4-2-centos_linux64.tar.gz

	== See also ==		== See also ==

Megen002: Created page with "[http://eutils.ncbi.nih.gov/Traces/sra/sra.cgi?view=announcement The Sequence Read Archive (SRA)] stores raw sequence data from "next-generation" sequencing technologies inclu..."

2014-03-17T21:13:33Z

Created page with "[http://eutils.ncbi.nih.gov/Traces/sra/sra.cgi?view=announcement The Sequence Read Archive (SRA)] stores raw sequence data from "next-generation" sequencing technologies inclu..."

New page

[http://eutils.ncbi.nih.gov/Traces/sra/sra.cgi?view=announcement The Sequence Read Archive (SRA)] stores raw sequence data from "next-generation" sequencing technologies including 454, IonTorrent, Illumina, SOLiD, Helicos and Complete Genomics. In addition to raw sequence data, SRA now stores alignment information in the form of read placements on a reference sequence.

SRA is NIH’s primary archive of high-throughput sequencing data and is part of the international partnership of archives (INSDC) at the NCBI, the European Bioinformatics Institute and the DNA Database of Japan. Data submitted to any of the three organizations are shared among them. [http://eutils.ncbi.nih.gov/Traces/sra/?view=software SRA-toolkit] can convert between SRA format and common formats such as fastq or SAM.

== Module file ==
The module file can be found in this location:
/cm/shared/modulefiles/SHARED/

<source lang='tcl'>
#%Module1.0#######################################################################
## SRA Toolkit 2.3.4 modulefile
##
proc ModulesHelp { } {

puts stderr "\tAdds SRA Toolkit 2.3.4 to your environment"
}

module-whatis "Adds SRA Toolkit 2.3.4 to your environment"

set sratoolkit_234_root /cm/shared/apps/SHARED/sra-toolkit/sratoolkit.2.3.4-2-centos_linux64/bin/

prepend-path PATH $sratoolkit_234_root

</source>

== See also ==
* [[Globally_installed_software | Globally installed software]]
* [[ABGC_modules | ABGC specific modules]]

== External links ==
* [http://bio-bwa.sourceforge.net/bwa.shtml BWA manpage]

Sra toolkit 2.3.4 - Revision history

Megen002: /* Module file */

Megen002: Created page with "[http://eutils.ncbi.nih.gov/Traces/sra/sra.cgi?view=announcement The Sequence Read Archive (SRA)] stores raw sequence data from "next-generation" sequencing technologies inclu..."