https://wiki.anunna.wur.nl/index.php?action=history&feed=atom&title=Soapdenovo2_r240 2026-04-18T15:19:50Z Revision history for this page on the wiki MediaWiki 1.43.1 https://wiki.anunna.wur.nl/index.php?title=Soapdenovo2_r240&diff=1194&oldid=prev 2014-03-15T13:07:30Z

<p><span class="autocomment">Installation details</span></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 15:07, 15 March 2014</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l28">Line 28:</td> <td colspan="2" class="diff-lineno">Line 28:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>The pre-compiled binaries were downloaded from SourceForge on 15-03-2014:</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>The pre-compiled binaries were downloaded from SourceForge on 15-03-2014:</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   http://sourceforge.net/projects/soapdenovo2/files/SOAPdenovo2/</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   http://sourceforge.net/projects/soapdenovo2/files/SOAPdenovo2/</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>This included the GapCloser software (v1.12) <del style="font-weight: bold; text-decoration: none;">and </del>ErrorCorrection (v0.04)</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>This included the GapCloser software (v1.12)<ins style="font-weight: bold; text-decoration: none;">, </ins>ErrorCorrection (v0.04)<ins style="font-weight: bold; text-decoration: none;">, and SOAPec (v2.01, includes Corrector_AR, Corrector_HA, KmerFreq_AR and KmerFreq_HA binaries).</ins></div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== See also ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== See also ==</div></td></tr> </table>

Megen002 https://wiki.anunna.wur.nl/index.php?title=Soapdenovo2_r240&diff=1189&oldid=prev 2014-03-15T12:49:29Z

<p><span class="autocomment">Installation details</span></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 14:49, 15 March 2014</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l28">Line 28:</td> <td colspan="2" class="diff-lineno">Line 28:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>The pre-compiled binaries were downloaded from SourceForge on 15-03-2014:</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>The pre-compiled binaries were downloaded from SourceForge on 15-03-2014:</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   http://sourceforge.net/projects/soapdenovo2/files/SOAPdenovo2/</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   http://sourceforge.net/projects/soapdenovo2/files/SOAPdenovo2/</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>This included the GapCloser software (v1.12)</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>This included the GapCloser software (v1.12<ins style="font-weight: bold; text-decoration: none;">) and ErrorCorrection (v0.04</ins>)</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== See also ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== See also ==</div></td></tr> </table>

Megen002 https://wiki.anunna.wur.nl/index.php?title=Soapdenovo2_r240&diff=1188&oldid=prev 2014-03-15T12:45:12Z

<p></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 14:45, 15 March 2014</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>'''[http://<del style="font-weight: bold; text-decoration: none;">en</del>.<del style="font-weight: bold; text-decoration: none;">wikipedia</del>.org/<del style="font-weight: bold; text-decoration: none;">wiki/BLAT_(bioinformatics) BLAT</del>]''' <del style="font-weight: bold; text-decoration: none;">(BLAST-like alignment tool) </del>is a <del style="font-weight: bold; text-decoration: none;">pairwise sequence alignment algorithm that was developed by Jim Kent at the University of California Santa Cruz (UCSC) in the early 2000s to assist in the assembly and annotation of the Human Genome</del>.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>'''[http://<ins style="font-weight: bold; text-decoration: none;">soap</ins>.<ins style="font-weight: bold; text-decoration: none;">genomics</ins>.org<ins style="font-weight: bold; text-decoration: none;">.cn</ins>/<ins style="font-weight: bold; text-decoration: none;">soapdenovo.html#intro2 SOAPdenovo2</ins>]''' is a <ins style="font-weight: bold; text-decoration: none;">popular genome assembler</ins>.</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l26">Line 26:</td> <td colspan="2" class="diff-lineno">Line 26:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Installation details ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Installation details ==</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>The <del style="font-weight: bold; text-decoration: none;">entire suite of </del>binaries<del style="font-weight: bold; text-decoration: none;">/executable was </del>downloaded on <del style="font-weight: bold; text-decoration: none;">20</del>-<del style="font-weight: bold; text-decoration: none;">12</del>-<del style="font-weight: bold; text-decoration: none;">2013</del>:</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>The <ins style="font-weight: bold; text-decoration: none;">pre-compiled </ins>binaries <ins style="font-weight: bold; text-decoration: none;">were </ins>downloaded <ins style="font-weight: bold; text-decoration: none;">from SourceForge </ins>on <ins style="font-weight: bold; text-decoration: none;">15</ins>-<ins style="font-weight: bold; text-decoration: none;">03</ins>-<ins style="font-weight: bold; text-decoration: none;">2014</ins>:</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">&lt;source lang='bash'&gt;</del></div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">  http</ins>://<ins style="font-weight: bold; text-decoration: none;">sourceforge</ins>.<ins style="font-weight: bold; text-decoration: none;">net</ins>/<ins style="font-weight: bold; text-decoration: none;">projects</ins>/<ins style="font-weight: bold; text-decoration: none;">soapdenovo2</ins>/<ins style="font-weight: bold; text-decoration: none;">files</ins>/<ins style="font-weight: bold; text-decoration: none;">SOAPdenovo2</ins>/</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">rsync -aP rsync</del>://<del style="font-weight: bold; text-decoration: none;">hgdownload</del>.<del style="font-weight: bold; text-decoration: none;">cse.ucsc.edu</del>/<del style="font-weight: bold; text-decoration: none;">genome</del>/<del style="font-weight: bold; text-decoration: none;">admin</del>/<del style="font-weight: bold; text-decoration: none;">exe</del>/<del style="font-weight: bold; text-decoration: none;">linux.x86_64</del>/ .<del style="font-weight: bold; text-decoration: none;">/</del></div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">This included the GapCloser software (v1</ins>.<ins style="font-weight: bold; text-decoration: none;">12)</ins></div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">&lt;/source&gt;</del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== See also ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== See also ==</div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l36">Line 36:</td> <td colspan="2" class="diff-lineno">Line 35:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== External links ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== External links ==</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* [http://<del style="font-weight: bold; text-decoration: none;">genome</del>.<del style="font-weight: bold; text-decoration: none;">ucsc</del>.<del style="font-weight: bold; text-decoration: none;">edu</del>/<del style="font-weight: bold; text-decoration: none;">FAQ/FAQblat</del>.html <del style="font-weight: bold; text-decoration: none;">Blat at UCSC</del>]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* [http://<ins style="font-weight: bold; text-decoration: none;">soap</ins>.<ins style="font-weight: bold; text-decoration: none;">genomics</ins>.<ins style="font-weight: bold; text-decoration: none;">org.cn</ins>/<ins style="font-weight: bold; text-decoration: none;">soapdenovo</ins>.html<ins style="font-weight: bold; text-decoration: none;">#intro2 SOAPdenovo2 home page</ins>]</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* [http://<del style="font-weight: bold; text-decoration: none;">hgdownload</del>.<del style="font-weight: bold; text-decoration: none;">cse</del>.<del style="font-weight: bold; text-decoration: none;">ucsc.edu</del>/<del style="font-weight: bold; text-decoration: none;">admin</del>/<del style="font-weight: bold; text-decoration: none;">exe</del>/<del style="font-weight: bold; text-decoration: none;">linux.x86_64</del>/ <del style="font-weight: bold; text-decoration: none;">Download page of 64-bit executables </del>for <del style="font-weight: bold; text-decoration: none;">Linux</del>]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* [http://<ins style="font-weight: bold; text-decoration: none;">sourceforge</ins>.<ins style="font-weight: bold; text-decoration: none;">net/projects/soapdenovo2/files/SOAPdenovo2/ SourceForge link for SOAPdenovo2]</ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* [http://sourceforge</ins>.<ins style="font-weight: bold; text-decoration: none;">net/projects</ins>/<ins style="font-weight: bold; text-decoration: none;">soapdenovo2</ins>/<ins style="font-weight: bold; text-decoration: none;">files</ins>/<ins style="font-weight: bold; text-decoration: none;">GapCloser</ins>/ <ins style="font-weight: bold; text-decoration: none;">SourceForge link </ins>for <ins style="font-weight: bold; text-decoration: none;">GapCloser</ins>]</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>~</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>~</div></td></tr> </table>

Megen002 https://wiki.anunna.wur.nl/index.php?title=Soapdenovo2_r240&diff=1187&oldid=prev 2014-03-15T12:38:46Z

<p>Created page with &quot; &#039;&#039;&#039;[http://en.wikipedia.org/wiki/BLAT_(bioinformatics) BLAT]&#039;&#039;&#039; (BLAST-like alignment tool) is a pairwise sequence alignment algorithm that was developed by Jim Kent at the U...&quot;</p> <p><b>New page</b></p><div><br /> &#039;&#039;&#039;[http://en.wikipedia.org/wiki/BLAT_(bioinformatics) BLAT]&#039;&#039;&#039; (BLAST-like alignment tool) is a pairwise sequence alignment algorithm that was developed by Jim Kent at the University of California Santa Cruz (UCSC) in the early 2000s to assist in the assembly and annotation of the Human Genome.<br /> <br /> <br /> == Module file ==<br /> The module file can be found in this location:<br /> /cm/shared/modulefiles/SHARED/<br /> <br /> &lt;source lang=&#039;tcl&#039;&gt;#%Module1.0#######################################################################<br /> ## SOAPdenovo2 r240 modulefile<br /> ##<br /> proc ModulesHelp { } {<br /> <br /> puts stderr &quot;\tAdds SOAPdenovo2 r240 to your environment&quot;<br /> }<br /> <br /> module-whatis &quot;Adds SOAPdenovo2 r240 to your environment&quot;<br /> <br /> set soapdenovo2_r240_root /cm/shared/apps/SHARED/SOAPdenovo2/SOAPdenovo2-bin-LINUX-generic-r240/<br /> <br /> prepend-path PATH $soapdenovo2_r240_root<br /> <br /> <br /> &lt;/source&gt;<br /> <br /> == Installation details ==<br /> <br /> The entire suite of binaries/executable was downloaded on 20-12-2013:<br /> &lt;source lang=&#039;bash&#039;&gt;<br /> rsync -aP rsync://hgdownload.cse.ucsc.edu/genome/admin/exe/linux.x86_64/ ./<br /> &lt;/source&gt;<br /> <br /> == See also ==<br /> * [[Globally_installed_software | Globally installed software]]<br /> * [[ABGC_modules | ABGC specific modules]]<br /> <br /> == External links ==<br /> * [http://genome.ucsc.edu/FAQ/FAQblat.html Blat at UCSC]<br /> * [http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/ Download page of 64-bit executables for Linux]<br /> ~</div>

Megen002