Hmmer 3.1 - Revision history

Megen002: /* Module file */

2014-03-15T09:00:39Z

Module file

← Older revision		Revision as of 11:00, 15 March 2014
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	== Module file ==		== Module file ==
	The module file can be found in this location:		The module file can be found in this location:
	/cm/shared/~~apps~~/~~WUR~~/~~ABGC/modulefiles~~		/cm/shared/modulefiles/SHARED/

	<source lang='tcl'>		<source lang='tcl'>
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	module-whatis "Adds hmmer v3.1 to your environment"		module-whatis "Adds hmmer v3.1 to your environment"

	set hmmer_31_root /cm/shared/apps/~~WUR/ABGC~~/hmmer/hmmer-3.1b1-linux-intel-x86_64/binaries/		set hmmer_31_root /cm/shared/apps/SHARED/hmmer/hmmer-3.1b1-linux-intel-x86_64/binaries/

	prepend-path PATH $hmmer_31_root		prepend-path PATH $hmmer_31_root
	</source>		</source>

	== Installation details ==		== Installation details ==
	Downloaded as pre-compiled binaries from the [ftp://selab.janelia.org/pub/software/hmmer3/3.1b1/hmmer-3.1b1-linux-intel-x86_64.tar.gz hmmer website].		Downloaded as pre-compiled binaries from the [ftp://selab.janelia.org/pub/software/hmmer3/3.1b1/hmmer-3.1b1-linux-intel-x86_64.tar.gz hmmer website].

Megen002 at 12:57, 21 December 2013

2013-12-21T12:57:47Z

← Older revision		Revision as of 14:57, 21 December 2013
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	prepend-path PATH $hmmer_31_root		prepend-path PATH $hmmer_31_root


	</source>		</source>
			== Installation details ==
			Downloaded as pre-compiled binaries from the [ftp://selab.janelia.org/pub/software/hmmer3/3.1b1/hmmer-3.1b1-linux-intel-x86_64.tar.gz hmmer website].

	== See also ==		== See also ==

Megen002: /* External links */

2013-12-21T12:52:23Z

External links

← Older revision		Revision as of 14:52, 21 December 2013
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	== External links ==		== External links ==
	* [http://~~bio-bwa~~.~~sourceforge~~.~~net/bwa.shtml BWA manpage~~]		* [http://hmmer.janelia.org hmmer website]

Megen002 at 12:51, 21 December 2013

2013-12-21T12:51:48Z

← Older revision		Revision as of 14:51, 21 December 2013
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			[http://hmmer.janelia.org HMMER] is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs).

	== Module file ==		== Module file ==
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	<source lang='tcl'>		<source lang='tcl'>
	#%Module1.0#######################################################################		#%Module1.0#######################################################################
	## ~~bwa 0~~.~~7.5a~~ modulefile		## hmmer 3.1 modulefile
	##		##
	proc ModulesHelp { } {		proc ModulesHelp { } {

	puts stderr "\tAdds ~~bwa v0~~.~~7.5a~~ to your environment"		puts stderr "\tAdds hmmer v3.1 to your environment"
	}		}

	module-whatis "Adds ~~bwa v0~~.~~7.5a~~ to your environment"		module-whatis "Adds hmmer v3.1 to your environment"

	set ~~bwa_075a_root~~ /cm/shared/apps/WUR/ABGC/~~bwa~~/~~bwa~~-0.~~7.5a~~		set hmmer_31_root /cm/shared/apps/WUR/ABGC/hmmer/hmmer-3.1b1-linux-intel-x86_64/binaries/

	prepend-path PATH $~~bwa_075a_root~~		prepend-path PATH $hmmer_31_root

Megen002: Created page with " == Module file == The module file can be found in this location: /cm/shared/apps/WUR/ABGC/modulefiles #%Module1.0######################################..."

2013-12-21T11:51:45Z

Created page with " == Module file == The module file can be found in this location: /cm/shared/apps/WUR/ABGC/modulefiles <source lang='tcl'> #%Module1.0######################################..."

New page

== Module file ==
The module file can be found in this location:
/cm/shared/apps/WUR/ABGC/modulefiles

<source lang='tcl'>
#%Module1.0#######################################################################
## bwa 0.7.5a modulefile
##
proc ModulesHelp { } {

puts stderr "\tAdds bwa v0.7.5a to your environment"
}

module-whatis "Adds bwa v0.7.5a to your environment"

set bwa_075a_root /cm/shared/apps/WUR/ABGC/bwa/bwa-0.7.5a

prepend-path PATH $bwa_075a_root

</source>

== See also ==
* [[Globally_installed_software | Globally installed software]]
* [[ABGC_modules | ABGC specific modules]]

== External links ==
* [http://bio-bwa.sourceforge.net/bwa.shtml BWA manpage]