Hjmegens at 07:16, 25 November 2013

2013-11-25T07:16:19Z

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Genomics Journal Club

> How to choose your paper:
We'd like to restrain a little the scope of the journal club, because it can very easily drift. Thus, we'd prefer if you present papers linked to Genomics, molecular biology or evolutionary biology. However, if you'd like to present a paper that you find particularly interesting but do not fall directly into these categories, do not hesitate.
Papers describing interesting and novel finding are of course very interesting to present. However, I'd like to encourage you also to present papers that you find 'dodgy'. It is always interesting to stimulate a debate around a bad piece of Science.

> How to proceed:
Papers have to be sent to me (laurent.frantz@wur.nl) at least 1 WEEK in advance so I can make sure that it has not been presented before. I will take care of sending the paper around, also a week before the meeting so that the attendees have time to read it.

> How to prepare your talk:
Usually, it is easy, simply use the figures from the paper, highlighting methods, results and conclusions.

For those of you that use Mendeley reference manager, I have created a group to share the papers discussed in the meeting. You can find the group at - http://www.mendeley.com/groups/2729461/abgc-genomic-journal-club/ - Please join, I will dump all the paper there too so you can always find them back.

> Room reservation: http://reservering.zodiac.wur.nl/

{| class="wikitable"
|-
! Date
! Time
! Location
! Responsible
! Paper
|-
| October 31, 2012
| 11.00
| A0108
| Laurent Frantz
| Sankararaman S, Patterson N, Li H, Pääbo S, Reich D (2012) The Date of Interbreeding between Neandertals and Modern Humans. PLoS Genet 8(10): e1002947. doi:10.1371/journal.pgen.1002947 [http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002947]
|-
| November 14, 2012
| 11.00
| A0108
| Tristan de Jong
| Yasuhiro Go and Yoshihito Niimura Similar Numbers but Different Repertoires of Olfactory Receptor Genes in Humans and Chimpanzees Mol Biol Evol (2008) 25(9): 1897-1907 doi:10.1093/molbev/msn135 [http://www.ncbi.nlm.nih.gov/pubmed/18562338]
|-
| November 28, 2012
| 11.00
| A0108
| Ole Madsen
| Li, M. et al. An atlas of DNA methylomes in porcine adipose and muscle tissues. Nat. Commun. 3:850 doi: 10.1038/ncomms1854 (2012) [http://www.nature.com/ncomms/journal/v3/n5/full/ncomms1854.html]
|-
| January 22, 2013
| 11.00
| A0108
| Patricia de Lely
| Jacob J. Michaelson et. al.. Whole-Genome Sequencing in Autism Identifies Hot Spots for De Novo Germline Mutation. Cell 151: 1431-1442 (2012) [http://www.cell.com/abstract/S0092-8674(12)01404-3]

|-
| February 5, 2013
| 12.30
| E1244
| Yogesh Paudel
| Axelsson et al. The genomic signature of dog domestication reveals adaptation to a starch-rich diet. Nature doi:10.1038/nature11837 (2013) [http://www.nature.com/nature/journal/vaop/ncurrent/full/nature11837.html]
|-
| February 19, 2013
| 11.00
| A0107
| Elsa Kentepozidou (*Rea)
| Bourret et al. SNP-array reveals genome-wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon (Salmo salar). Mol. Eco DOI: 10.1111/mec.12003 (2012)[http://onlinelibrary.wiley.com/doi/10.1111/mec.12003/abstract]
|-
| March 19, 2013
| 11.00
| A0108
| Mirte Bosse
| Staubach F et al. Genome Patterns of Selection and Introgression of Haplotypes in Natural Populations of the House Mouse (Mus musculus). PLoS Genet 8(8): e1002891. doi:10.1371/journal.pgen.1002891 (2012)[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002891]
|-
| April 02, 2013
| 11.00
| E1244
| Martien Groenen
| The 1000 Genomes Project Consortium. An integrated map of genetic variation from 1,092 human genomes. Nature 491, 56–65 doi:10.1038/nature11632 (2012) [http://www.nature.com/nature/journal/v491/n7422/full/nature11632.html]
|-
| April 16, 2013
| 11.00
| A0107
| Marzieh Heidaritabar
| Ober U et al. Using Whole-Genome Sequence Data to Predict Quantitative Trait Phenotypes in Drosophila melanogaster. PLoS Genet 8(5): e1002685.doi:10.1371/journal.pgen.1002685 (2012) [http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002685]
|-
| May 1, 2013
| 11.00
| E1244
| Any Volunteer??
|
|-
| May 21, 2013
| 11.00
| E1242
| Qianqian Zhang
| Patterns of Ancestry, Signatures of Natural Selection,and Genetic Association with Stature in Western African Pygmies. PLoS Genet 8(4): e1002641.doi:10.1371/journal.pgen.1002641 (2012) [http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002641]
|-
| May 28, 2013
| 11.00
| A0107
| Hendrik-Jan Megens
| Cancelled
|-
| June 11, 2013
| 11.00
| A0107
| Rascha Nuijten
| Genome-wide patterns of divergence and gene ﬂow across a butterﬂy radiation. Molecular Ecology 22(3):doi:10.1111/j.1365-294X.2012.05730.x (2013)[http://onlinelibrary.wiley.com/doi/10.1111/j.1365-294X.2012.05730.x/pdf]
|-
| June 25, 2013
| 11.00
| A0107
| Richard Crooijmans
| TBA

Genomics Journal Club - Revision history

Hjmegens at 07:16, 25 November 2013