Exonerate 2.2.0 - Revision history

Megen002: /* Module file */

2014-03-15T08:59:17Z

Module file

← Older revision		Revision as of 10:59, 15 March 2014
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	== Module file ==		== Module file ==
	The module file can be found in this location:		The module file can be found in this location:
	/cm/shared/~~apps~~/~~WUR~~/~~ABGC/modulefiles~~		/cm/shared/modulefiles/SHARED/

	<source lang='tcl'>		<source lang='tcl'>
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	module-whatis "Adds exonerate 2.2.0-x86_64 to your environment"		module-whatis "Adds exonerate 2.2.0-x86_64 to your environment"

	set exonerate_220_root /cm/shared/apps/~~WUR/ABGC~~/exonerate/exonerate-2.2.0-x86_64/bin		set exonerate_220_root /cm/shared/apps/SHARED/exonerate/exonerate-2.2.0-x86_64/bin

	prepend-path PATH $exonerate_220_root		prepend-path PATH $exonerate_220_root
	</source>		</source>

	== Installation details ==		== Installation details ==
	Installed as pre- compiled libraries downloaded from the Exonerate [https://www.ebi.ac.uk/~guy/exonerate/exonerate-2.2.0-x86_64.tar.gz download page]		Installed as pre- compiled libraries downloaded from the Exonerate [https://www.ebi.ac.uk/~guy/exonerate/exonerate-2.2.0-x86_64.tar.gz download page]

Megen002 at 13:02, 21 December 2013

2013-12-21T13:02:01Z

← Older revision		Revision as of 15:02, 21 December 2013
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	prepend-path PATH $exonerate_220_root		prepend-path PATH $exonerate_220_root
	</source>		</source>
			== Installation details ==
			Installed as pre- compiled libraries downloaded from the Exonerate [https://www.ebi.ac.uk/~guy/exonerate/exonerate-2.2.0-x86_64.tar.gz download page]

	== See also ==		== See also ==

Megen002 at 13:00, 21 December 2013

2013-12-21T13:00:34Z

← Older revision		Revision as of 15:00, 21 December 2013
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			[https://www.ebi.ac.uk/~guy/exonerate/ Exonerate] is a generic tool for pairwise sequence comparison. It allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics.
	== Module file ==		== Module file ==
	The module file can be found in this location:		The module file can be found in this location:

Megen002: /* External links */

2013-12-21T12:59:30Z

External links

← Older revision		Revision as of 14:59, 21 December 2013
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	== External links ==		== External links ==
	* [~~http~~://~~bio-bwa~~.~~sourceforge~~.~~net~~/~~bwa.shtml BWA manpage~~]		* [https://www.ebi.ac.uk/~guy/exonerate/ Exonerate homepage at EBI]

Megen002 at 12:58, 21 December 2013

2013-12-21T12:58:39Z

← Older revision		Revision as of 14:58, 21 December 2013
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	<source lang='tcl'>		<source lang='tcl'>
	#%Module1.0#######################################################################		#%Module1.0#######################################################################
	## ~~bwa 0~~.7.5a modulefile		## exonerate 2.2.0-x86_64 modulefile
	##		##
	proc ModulesHelp { } {		proc ModulesHelp { } {

	puts stderr "\tAdds ~~bwa v0~~.7.5a to your environment"		puts stderr "\tAdds exonerate 2.2.0-x86_64 to your environment"
	}		}

	module-whatis "Adds ~~bwa v0~~.7.5a to your environment"		module-whatis "Adds exonerate 2.2.0-x86_64 to your environment"

	~~set bwa_075a_root /cm/shared/apps/WUR/ABGC/bwa/bwa-0.7.5a~~

	~~prepend-path PATH $bwa_075a_root~~

			set exonerate_220_root /cm/shared/apps/WUR/ABGC/exonerate/exonerate-2.2.0-x86_64/bin

			prepend-path PATH $exonerate_220_root
	</source>		</source>

Megen002: Created page with " == Module file == The module file can be found in this location: /cm/shared/apps/WUR/ABGC/modulefiles #%Module1.0######################################..."

2013-12-21T11:52:29Z

Created page with " == Module file == The module file can be found in this location: /cm/shared/apps/WUR/ABGC/modulefiles <source lang='tcl'> #%Module1.0######################################..."

New page

== Module file ==
The module file can be found in this location:
/cm/shared/apps/WUR/ABGC/modulefiles

<source lang='tcl'>
#%Module1.0#######################################################################
## bwa 0.7.5a modulefile
##
proc ModulesHelp { } {

puts stderr "\tAdds bwa v0.7.5a to your environment"
}

module-whatis "Adds bwa v0.7.5a to your environment"

set bwa_075a_root /cm/shared/apps/WUR/ABGC/bwa/bwa-0.7.5a

prepend-path PATH $bwa_075a_root

</source>

== See also ==
* [[Globally_installed_software | Globally installed software]]
* [[ABGC_modules | ABGC specific modules]]

== External links ==
* [http://bio-bwa.sourceforge.net/bwa.shtml BWA manpage]