Environment Modules - Revision history

Dawes0011 at 08:59, 16 June 2023

2023-06-16T08:59:32Z

← Older revision		Revision as of 10:59, 16 June 2023
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	You should be able to see which modules are loaded.		You should be able to see which modules are loaded.

	One of the most important modules to load is 'shared' - this is Anunna specific, as it will extend the MODULEPATH environment variable to use modules present in ~~/cm~~/shared as well as /cm/local/ . Without this, many modules will not be available to you.		One of the most important modules to load is 'shared' - this is Anunna specific, as it will extend the MODULEPATH environment variable to use modules present in /shared as well as /cm/local/ . Without this, many modules will not be available to you.

	== Loading modules ==		== Loading modules ==

Vaend001 at 14:17, 8 March 2019

2019-03-08T14:17:24Z

← Older revision		Revision as of 16:17, 8 March 2019
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	== Preface ==		== Preface ==
	Environment modules [http://modules.sourceforge.net] are a smart way to provide interchangeable blocks of executables and reproducible environments for use in an HPC. It's also the only way to provide simultaneous versions of the same software without collisions, as each module is housed entirely in its own subfolder structure~~. This is in heavy use on the AgroGenomics HPC~~.		Environment modules [http://modules.sourceforge.net] are a smart way to provide interchangeable blocks of executables and reproducible environments for use in an HPC. It's also the only way to provide simultaneous versions of the same software without collisions, as each module is housed entirely in its own subfolder structure.

	== Using modules ==		== Using modules ==
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	You should be able to see which modules are loaded.		You should be able to see which modules are loaded.

	One of the most important modules to load is 'shared' - this is ~~HPCAG~~ specific, as it will extend the MODULEPATH environment variable to use modules present in /cm/shared as well as /cm/local/ . Without this, many modules will not be available to you.		One of the most important modules to load is 'shared' - this is Anunna specific, as it will extend the MODULEPATH environment variable to use modules present in /cm/shared as well as /cm/local/ . Without this, many modules will not be available to you.

	== Loading modules ==		== Loading modules ==
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	This works if both modules have the same base path.		This works if both modules have the same base path.

	~~== See also ==~~
	* [[B4F_cluster \| B4F Cluster]]

	== External links ==		== External links ==
	* http://modules.sourceforge.net		* http://modules.sourceforge.net
	* http://www.admin-magazine.com/HPC/Articles/Environment-Modules		* http://www.admin-magazine.com/HPC/Articles/Environment-Modules

Dawes001 at 08:22, 6 June 2017

2017-06-06T08:22:45Z

@@ Line 1: / Line 1: @@
 == Loading modules ==
 Availability of (different versions of) software can be checked by the following command:
-  module avail
+ <nowiki>module avail</nowiki>
-In the list you should note that python3 is indeed available to be loaded, which then can be loaded with the following command:
+ <nowiki>Module 'module/2' conflicts with the currently loaded module(s) 'module/1'</nowiki>
-  module load python/3.3.3
+If you're seeing this, you must unload or switch your modules rather than overloading them:
 == See also ==

Hjmegens: /* Loading modules */

2013-11-29T20:47:42Z

Loading modules

← Older revision		Revision as of 22:47, 29 November 2013
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	== Loading modules ==		== Loading modules ==
	~~In order for this script to run, the first thing that is needed is that Python3, which is not the default Python version on the cluster, is load into your environment.~~ Availability of (different versions of) software can be checked by the following command:		Availability of (different versions of) software can be checked by the following command:
	module avail		module avail

	In the list you should note that python3 is indeed available to be loaded, which then can be loaded with the following command:		In the list you should note that python3 is indeed available to be loaded, which then can be loaded with the following command:
	module load python/3.3.3		module load python/3.3.3

	== See also ==		== See also ==
	* [[B4F_cluster \| B4F Cluster]]		* [[B4F_cluster \| B4F Cluster]]

Hjmegens: /* External links */

2013-11-29T20:47:02Z

External links

← Older revision		Revision as of 22:47, 29 November 2013
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	== External links ==		== External links ==
	http://modules.sourceforge.net		* http://modules.sourceforge.net
	http://www.admin-magazine.com/HPC/Articles/Environment-Modules		* http://www.admin-magazine.com/HPC/Articles/Environment-Modules

Hjmegens at 20:46, 29 November 2013

2013-11-29T20:46:40Z

← Older revision		Revision as of 22:46, 29 November 2013
Line 1:		Line 1:

			== Loading modules ==
			In order for this script to run, the first thing that is needed is that Python3, which is not the default Python version on the cluster, is load into your environment. Availability of (different versions of) software can be checked by the following command:
			module avail

			In the list you should note that python3 is indeed available to be loaded, which then can be loaded with the following command:
			module load python/3.3.3
	== See also ==		== See also ==
	* [[B4F_cluster \| B4F Cluster]]		* [[B4F_cluster \| B4F Cluster]]

Hjmegens: Created page with " == See also == * B4F Cluster == External links == http://modules.sourceforge.net http://www.admin-magazine.com/HPC/Articles/Environment-Modules"

2013-11-29T20:45:19Z

Created page with " == See also == * B4F Cluster == External links == http://modules.sourceforge.net http://www.admin-magazine.com/HPC/Articles/Environment-Modules"

New page

== See also ==
* [[B4F_cluster | B4F Cluster]]

== External links ==
http://modules.sourceforge.net
http://www.admin-magazine.com/HPC/Articles/Environment-Modules