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Bwa 5.9 - Revision history
2026-04-18T21:47:37Z
Revision history for this page on the wiki
MediaWiki 1.43.1
https://wiki.anunna.wur.nl/index.php?title=Bwa_5.9&diff=1167&oldid=prev
Megen002: /* Module file */
2014-03-15T08:57:32Z
<p><span class="autocomment">Module file</span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 10:57, 15 March 2014</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Module file ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Module file ==</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>The module file can be found in this location:</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>The module file can be found in this location:</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> /cm/shared/<del style="font-weight: bold; text-decoration: none;">apps</del>/<del style="font-weight: bold; text-decoration: none;">WUR</del>/<del style="font-weight: bold; text-decoration: none;">ABGC/modulefiles</del></div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> /cm/shared/<ins style="font-weight: bold; text-decoration: none;">modulefiles</ins>/<ins style="font-weight: bold; text-decoration: none;">SHARED</ins>/</div></td></tr>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><source lang='tcl'></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><source lang='tcl'></div></td></tr>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>module-whatis "Adds bwa v0.5.9 to your environment"</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>module-whatis "Adds bwa v0.5.9 to your environment"</div></td></tr>
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<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>set bwa_059_root /cm/shared/apps/<del style="font-weight: bold; text-decoration: none;">WUR/ABGC</del>/bwa/bwa-0.5.9/</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>set bwa_059_root /cm/shared/apps/<ins style="font-weight: bold; text-decoration: none;">SHARED</ins>/bwa/bwa-0.5.9/</div></td></tr>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>prepend-path PATH $bwa_059_root</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>prepend-path PATH $bwa_059_root</div></td></tr>
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Megen002
https://wiki.anunna.wur.nl/index.php?title=Bwa_5.9&diff=957&oldid=prev
Megen002: Created page with "[http://en.wikipedia.org/wiki/Burrows-Wheeler_Aligner#Short-Read_Sequence_Alignment BWA] is a short read aligner designed by Heng Li and currently the most widely used aligner..."
2013-12-21T10:42:45Z
<p>Created page with "[http://en.wikipedia.org/wiki/Burrows-Wheeler_Aligner#Short-Read_Sequence_Alignment BWA] is a short read aligner designed by Heng Li and currently the most widely used aligner..."</p>
<p><b>New page</b></p><div>[http://en.wikipedia.org/wiki/Burrows-Wheeler_Aligner#Short-Read_Sequence_Alignment BWA] is a short read aligner designed by Heng Li and currently the most widely used aligner for re-sequencing analysis.<br />
<br />
== Module file ==<br />
The module file can be found in this location:<br />
/cm/shared/apps/WUR/ABGC/modulefiles<br />
<br />
<source lang='tcl'><br />
#%Module1.0#######################################################################<br />
## bwa 0.5.9 modulefile<br />
##<br />
proc ModulesHelp { } {<br />
<br />
puts stderr "\tAdds bwa v0.5.9 to your environment"<br />
}<br />
<br />
module-whatis "Adds bwa v0.5.9 to your environment"<br />
<br />
set bwa_059_root /cm/shared/apps/WUR/ABGC/bwa/bwa-0.5.9/<br />
<br />
prepend-path PATH $bwa_059_root<br />
<br />
</source><br />
<br />
== See also ==<br />
* [[Globally_installed_software | Globally installed software]]<br />
* [[ABGC_modules | ABGC specific modules]]<br />
<br />
== External links ==<br />
* [http://bio-bwa.sourceforge.net/bwa.shtml BWA manpage]</div>
Megen002