Megen002: Created page with "'''[http://bowtie-bio.sourceforge.net/bowtie2/index.shtml Bowtie]''' is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human g..."

2014-03-15T21:58:36Z

Created page with "'''[http://bowtie-bio.sourceforge.net/bowtie2/index.shtml Bowtie]''' is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human g..."

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'''[http://bowtie-bio.sourceforge.net/bowtie2/index.shtml Bowtie]''' is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end).

== Module file ==
The module file can be found in this location:
/cm/shared/modulefiles/SHARED/

<source lang='tcl'>
#%Module1.0#######################################################################
## bowtie1-1.0.0 modulefile
##
proc ModulesHelp { } {

puts stderr "\tAdds bowtie1-1.0.0 to your environment"
}

module-whatis "Adds bowtie1-1.0.0 to your environment"

set bowtie1_1_0_0_root /cm/shared/apps/SHARED/bowtie/bowtie-1.0.0/

prepend-path PATH $bowtie1_1_0_0_root

</source>

== Installation details ==

The pre-compiled binaries were downloaded from SourceForge on 15-03-2014:
http://sourceforge.net/projects/bowtie-bio/files/bowtie/1.0.0/

== See also ==
* [[Globally_installed_software | Globally installed software]]
* [[ABGC_modules | ABGC specific modules]]

== External links ==
* [http://bowtie-bio.sourceforge.net/index.shtml Bowtie home page]
* [http://sourceforge.net/projects/bowtie-bio/files/bowtie/1.0.0/ SourceForge link for Bowtie]

Bowtie1 v1.0.0 - Revision history

Megen002: Created page with "'''[http://bowtie-bio.sourceforge.net/bowtie2/index.shtml Bowtie]''' is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human g..."