Bioinformatics protocols ABG Chairgroup - Revision history

Dawes001 at 13:49, 19 March 2019

2019-03-19T13:49:13Z

← Older revision		Revision as of 15:49, 19 March 2019
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	* [[Short_read_mapping_pipeline_pig \| Short read mapping pipeline for the pig project]]		* [[Short_read_mapping_pipeline_pig \| Short read mapping pipeline for the pig project]]
	* [[1000Bulls_mapping_pipeline_at_ABGC \| 1000 Bulls mapping pipeline at ABGC]]		* [[1000Bulls_mapping_pipeline_at_ABGC \| 1000 Bulls mapping pipeline at ABGC]]

	~~== See also ==~~
	* [[B4F_cluster \| B4F Cluster]]
	* [[Lx6_and_Lx7_compute_nodes \| Lx6 and Lx7 compute nodes]]
	~~== External links ==~~

Hjmegens at 08:19, 30 November 2013

2013-11-30T08:19:35Z

← Older revision		Revision as of 10:19, 30 November 2013
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	* [[Create_shortcut_log-in_command \| Create a shortcut for the ssh log-in command]]		* [[Create_shortcut_log-in_command \| Create a shortcut for the ssh log-in command]]
	* [[Installing_R_packages_locally \| Installing R packages locally]]		* [[Installing_R_packages_locally \| Installing R packages locally]]
			* [[ABGSA \| Animal Breeding and Genomics Sequence Archives (ABGSA)]]
			* [[Short_read_mapping_pipeline_pig \| Short read mapping pipeline for the pig project]]
	* [[1000Bulls_mapping_pipeline_at_ABGC \| 1000 Bulls mapping pipeline at ABGC]]		* [[1000Bulls_mapping_pipeline_at_ABGC \| 1000 Bulls mapping pipeline at ABGC]]

Hjmegens at 20:59, 26 November 2013

2013-11-26T20:59:22Z

← Older revision		Revision as of 22:59, 26 November 2013
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	* [[Create_shortcut_log-in_command \| Create a shortcut for the ssh log-in command]]		* [[Create_shortcut_log-in_command \| Create a shortcut for the ssh log-in command]]
	* [[Installing_R_packages_locally \| Installing R packages locally]]		* [[Installing_R_packages_locally \| Installing R packages locally]]
			* [[1000Bulls_mapping_pipeline_at_ABGC \| 1000 Bulls mapping pipeline at ABGC]]

	== See also ==		== See also ==

Hjmegens at 14:59, 26 November 2013

2013-11-26T14:59:05Z

← Older revision		Revision as of 16:59, 26 November 2013
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	* [[ssh_without_password \| ssh without password]]		* [[ssh_without_password \| ssh without password]]
	* [[Create_shortcut_log-in_command \| Create a shortcut for the ssh log-in command]]		* [[Create_shortcut_log-in_command \| Create a shortcut for the ssh log-in command]]
			* [[Installing_R_packages_locally \| Installing R packages locally]]

	== See also ==		== See also ==

Hjmegens at 21:05, 24 November 2013

2013-11-24T21:05:29Z

← Older revision		Revision as of 23:05, 24 November 2013
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	* [[Setting_up_Python_virtualenv \| Setting up and using a virtual environment for Python3 ]]		* [[Setting_up_Python_virtualenv \| Setting up and using a virtual environment for Python3 ]]
	* [[ssh_without_password \| ssh without password]]		* [[ssh_without_password \| ssh without password]]
			* [[Create_shortcut_log-in_command \| Create a shortcut for the ssh log-in command]]

	== See also ==		== See also ==

Hjmegens at 21:04, 24 November 2013

2013-11-24T21:04:40Z

← Older revision		Revision as of 23:04, 24 November 2013
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	This page is intended as a portal to pages concerning best practices, workflows and pipelines, and other protocols (including scripts).		This page is intended as a portal to pages concerning best practices, workflows and pipelines, and other protocols (including scripts).

			== A list of tutorials, workflows, and recipes ==
	* [[Mapping_reads_with_Mosaik \| Mapping Illumina GA2/HiSeq reads to the Sus scrofa genome assembly]]		* [[Mapping_reads_with_Mosaik \| Mapping Illumina GA2/HiSeq reads to the Sus scrofa genome assembly]]
	* [[convert_fastq_to_fasta \| A Perl script to convert fastq to fasta file format]]		* [[convert_fastq_to_fasta \| A Perl script to convert fastq to fasta file format]]
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	* [[Setting_up_Python_virtualenv \| Setting up and using a virtual environment for Python3 ]]		* [[Setting_up_Python_virtualenv \| Setting up and using a virtual environment for Python3 ]]
	* [[ssh_without_password \| ssh without password]]		* [[ssh_without_password \| ssh without password]]

			== See also ==
			* [[B4F_cluster \| B4F Cluster]]
			* [[Lx6_and_Lx7_compute_nodes \| Lx6 and Lx7 compute nodes]]
			== External links ==

Hjmegens at 21:01, 24 November 2013

2013-11-24T21:01:54Z

← Older revision		Revision as of 23:01, 24 November 2013
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	* [[Mapping_reads_with_Mosaik \| Mapping Illumina GA2/HiSeq reads to the Sus scrofa genome assembly]]		* [[Mapping_reads_with_Mosaik \| Mapping Illumina GA2/HiSeq reads to the Sus scrofa genome assembly]]
	* [[convert_fastq_to_fasta \| A Perl script to ~~conver~~ fastq to fasta file format]]		* [[convert_fastq_to_fasta \| A Perl script to convert fastq to fasta file format]]
	* [[Setup Printers on Ubuntu Machines]]		* [[Setup Printers on Ubuntu Machines]]
	* [[Mapping Pair-end reads with Stampy]]		* [[Mapping Pair-end reads with Stampy]]
	* [[making_slices_from_BAM_files \| Create slices from a collection of BAM files ]]		* [[making_slices_from_BAM_files \| Create slices from a collection of BAM files ]]
			* [[Setting_up_Python_virtualenv \| Setting up and using a virtual environment for Python3 ]]
			* [[ssh_without_password \| ssh without password]]

Hjmegens at 10:38, 7 March 2012

2012-03-07T10:38:24Z

New page

This page is intended as a portal to pages concerning best practices, workflows and pipelines, and other protocols (including scripts).

* [[Mapping_reads_with_Mosaik | Mapping Illumina GA2/HiSeq reads to the Sus scrofa genome assembly]]
* [[convert_fastq_to_fasta | A Perl script to conver fastq to fasta file format]]
* [[Setup Printers on Ubuntu Machines]]
* [[Mapping Pair-end reads with Stampy]]
* [[making_slices_from_BAM_files | Create slices from a collection of BAM files ]]

Hjmegens at 16:48, 6 December 2011

2011-12-06T16:48:37Z

← Older revision		Revision as of 18:48, 6 December 2011
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	* [[Mapping_reads_with_Mosaik \| Mapping Illumina GA2/HiSeq reads to the Sus scrofa genome assembly]]		* [[Mapping_reads_with_Mosaik \| Mapping Illumina GA2/HiSeq reads to the Sus scrofa genome assembly]]
	* [[convert_fastq_to_fasta \| A Perl script to conver fastq to fasta file format]]		* [[convert_fastq_to_fasta \| A Perl script to conver fastq to fasta file format]]
			* [[newpage]]

Hjmegens at 10:46, 30 November 2011

2011-11-30T10:46:11Z

← Older revision		Revision as of 12:46, 30 November 2011
Line 1:		Line 1:
			This page is intended as a portal to pages concerning best practices, workflows and pipelines, and other protocols (including scripts).

	* [[Mapping_reads_with_Mosaik \| Mapping Illumina GA2/HiSeq reads to the Sus scrofa genome assembly]]		* [[Mapping_reads_with_Mosaik \| Mapping Illumina GA2/HiSeq reads to the Sus scrofa genome assembly]]
			* [[convert_fastq_to_fasta \| A Perl script to conver fastq to fasta file format]]

← Older revision		Revision as of 10:19, 30 November 2013
Line 11:		Line 11:
	* [[Create_shortcut_log-in_command \| Create a shortcut for the ssh log-in command]]		* [[Create_shortcut_log-in_command \| Create a shortcut for the ssh log-in command]]
	* [[Installing_R_packages_locally \| Installing R packages locally]]		* [[Installing_R_packages_locally \| Installing R packages locally]]
			* [[ABGSA \| Animal Breeding and Genomics Sequence Archives (ABGSA)]]
			* [[Short_read_mapping_pipeline_pig \| Short read mapping pipeline for the pig project]]
	* [[1000Bulls_mapping_pipeline_at_ABGC \| 1000 Bulls mapping pipeline at ABGC]]		* [[1000Bulls_mapping_pipeline_at_ABGC \| 1000 Bulls mapping pipeline at ABGC]]