Bedtools2.18 - Revision history

Prins0891: to

 to fix code blocks

2023-06-15T14:38:42Z

<source> to <pre> to fix code blocks

← Older revision		Revision as of 16:38, 15 June 2023
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	/cm/shared/modulefiles/SHARED/		/cm/shared/modulefiles/SHARED/

	<~~source lang='tcl'~~>		<pre>
	#%Module1.0#######################################################################		#%Module1.0#######################################################################
	## bedtools 2.18.0 modulefile		## bedtools 2.18.0 modulefile
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	prepend-path PATH $bedtools_2180_root		prepend-path PATH $bedtools_2180_root

	</~~source~~>		</pre>

	== Installation details ==		== Installation details ==

Megen002: /* Module file */

2014-03-15T08:53:40Z

Module file

← Older revision		Revision as of 10:53, 15 March 2014
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	== Module file ==		== Module file ==
	The module file can be found in this location:		The module file can be found in this location:
	/cm/shared/~~apps~~/~~WUR~~/~~ABGC/modulefiles~~		/cm/shared/modulefiles/SHARED/

	<source lang='tcl'>		<source lang='tcl'>
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	module-whatis "Adds bedtools v2.18.0 to your environment"		module-whatis "Adds bedtools v2.18.0 to your environment"

	set bedtools_2180_root /cm/shared/apps/~~WUR/ABGC~~/bedtools/bedtools2.18.0/bin/		set bedtools_2180_root /cm/shared/apps/SHARED/bedtools/bedtools2.18.0/bin/

	prepend-path PATH $bedtools_2180_root		prepend-path PATH $bedtools_2180_root

	</source>		</source>

	== Installation details ==		== Installation details ==
	Compiled from source using gcc 4.4.		Compiled from source using gcc 4.4.

Megen002: Created page with "Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is,..."

2013-12-24T09:59:53Z

Created page with "Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is,..."

New page

Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome. For example, bedtools allows one to intersect, merge, count, complement, and shuffle genomic intervals from multiple files in widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF.

While each individual tool is designed to do a relatively simple task (e.g., intersect two interval files), quite sophisticated analyses can be conducted by combining multiple bedtools operations on the UNIX command line.

== Module file ==
The module file can be found in this location:
/cm/shared/apps/WUR/ABGC/modulefiles

<source lang='tcl'>
#%Module1.0#######################################################################
## bedtools 2.18.0 modulefile
##
proc ModulesHelp { } {

puts stderr "\tAdds bedtools v2.18.0 to your environment"
}

module-whatis "Adds bedtools v2.18.0 to your environment"

set bedtools_2180_root /cm/shared/apps/WUR/ABGC/bedtools/bedtools2.18.0/bin/

prepend-path PATH $bedtools_2180_root

</source>
== Installation details ==
Compiled from source using gcc 4.4.

== See also ==
* [[Globally_installed_software | Globally installed software]]
* [[ABGC_modules | ABGC specific modules]]

== External links ==
* [https://github.com/arq5x/bedtools2 Bedtools2 page on GitHub]