Herre011: Created page with "[http://popgen.dk/wiki/index.php/ANGSD ANGSD] ANGSD is a software for analyzing next generation sequencing data. The software can handle a number of different input types from..."

2015-02-05T14:49:21Z

Created page with "[http://popgen.dk/wiki/index.php/ANGSD ANGSD] ANGSD is a software for analyzing next generation sequencing data. The software can handle a number of different input types from..."

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[http://popgen.dk/wiki/index.php/ANGSD ANGSD] ANGSD is a software for analyzing next generation sequencing data. The software can handle a number of different input types from mapped reads to imputed genotype probabilities. Most methods take genotype uncertainty into account instead of basing the analysis on called genotypes. This is especially useful for low and medium depth data. The software is written in C++ and has been used on large sample sizes.

== Module file ==
The module file can be found in this location:
/cm/shared/modulefiles/SHARED/

<source lang='tcl'>
#%Module1.0#######################################################################
## ANGSD 0.614 modulefile
##
proc ModulesHelp { } {

puts stderr "\tAdds ANGSD v0.614 to your environment"
}

module-whatis "Adds ANGSD v0.614 to your environment"

set angsd_v0614_root /cm/shared/apps/WUR/ABGC/ANGSD/angsd0.614

prepend-path PATH $angsd_v0614_root

</source>

== Installation details ==
Installed from downloaded 64bit binary, see external links.

== See also ==
* [[Globally_installed_software | Globally installed software]]
* [[ABGC_modules | ABGC specific modules]]

== External links ==
* [http://popgen.dk/wiki/index.php/ANGSD]
* [https://github.com/ANGSD/angsd]

ANGSD 0.614 - Revision history

Herre011: Created page with "[http://popgen.dk/wiki/index.php/ANGSD ANGSD] ANGSD is a software for analyzing next generation sequencing data. The software can handle a number of different input types from..."