ABGC bioinformatics - Revision history

Hjmegens: /* Bioinformatics infrastructure */

2012-03-04T19:44:29Z

Bioinformatics infrastructure

← Older revision		Revision as of 21:44, 4 March 2012
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	== Bioinformatics infrastructure ==		== Bioinformatics infrastructure ==
	Schematic of bioinformatics infrastructure at ABGC. All servers are running Red Hat Enterprise Linux (RHEL). Jobs can be [[submit job with qsub \| submitted]] with the Sun Grid Engine (SGE). A user account is needed to work on the machines.		Schematic of bioinformatics infrastructure at ABGC. All servers are running Red Hat Enterprise Linux (RHEL). Jobs can be [[submit job with qsub \| submitted]] with the Sun Grid Engine (SGE). A user account is needed to work on the machines.
	[[File:Bioinformatics-~~infra~~.gif\|thumb\|left\|600px]]		[[File:Bioinformatics-infra2.gif\|thumb\|left\|600px]]
	{{-}}		{{-}}
	* scomp1038 aka lx5 aka abgc.asg.wur.nl: a VM hosted by FB-ICT.		* scomp1038 aka lx5 aka abgc.asg.wur.nl: a VM hosted by FB-ICT.

2011-12-02T10:01:03Z

← Older revision		Revision as of 12:01, 2 December 2011
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	* scomp1090 aka lx6: HP Proliant server with 48 cores and 512GB RAM.		* scomp1090 aka lx6: HP Proliant server with 48 cores and 512GB RAM.
	* scomp1095 aka lx7: HP Proliant server with 48 cores and 192GB RAM.		* scomp1095 aka lx7: HP Proliant server with 48 cores and 192GB RAM.

			Lx5-7 naming scheme was inspired by earlier Linux servers at the ABGC. Lx3 got discontinued in 2010, Lx4 in 2011.

2011-12-02T09:58:33Z

← Older revision		Revision as of 11:58, 2 December 2011
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	Schematic of bioinformatics infrastructure at ABGC. All servers are running Red Hat Enterprise Linux (RHEL). Jobs can be [[submit job with qsub \| submitted]] with the Sun Grid Engine (SGE). A user account is needed to work on the machines.		Schematic of bioinformatics infrastructure at ABGC. All servers are running Red Hat Enterprise Linux (RHEL). Jobs can be [[submit job with qsub \| submitted]] with the Sun Grid Engine (SGE). A user account is needed to work on the machines.
	[[File:Bioinformatics-infra.gif\|thumb\|left\|600px]]		[[File:Bioinformatics-infra.gif\|thumb\|left\|600px]]
			{{-}}
	* scomp1038 aka lx5 aka abgc.asg.wur.nl: a VM hosted by FB-ICT.		* scomp1038 aka lx5 aka abgc.asg.wur.nl: a VM hosted by FB-ICT.
	* scomp1090 aka lx6: HP Proliant server with 48 cores and 512GB RAM.		* scomp1090 aka lx6: HP Proliant server with 48 cores and 512GB RAM.
	* scomp1095 aka lx7: HP Proliant server with 48 cores and 192GB RAM.		* scomp1095 aka lx7: HP Proliant server with 48 cores and 192GB RAM.

2011-12-02T09:58:14Z

← Older revision		Revision as of 11:58, 2 December 2011
Line 13:		Line 13:
	Schematic of bioinformatics infrastructure at ABGC. All servers are running Red Hat Enterprise Linux (RHEL). Jobs can be [[submit job with qsub \| submitted]] with the Sun Grid Engine (SGE). A user account is needed to work on the machines.		Schematic of bioinformatics infrastructure at ABGC. All servers are running Red Hat Enterprise Linux (RHEL). Jobs can be [[submit job with qsub \| submitted]] with the Sun Grid Engine (SGE). A user account is needed to work on the machines.
	[[File:Bioinformatics-infra.gif\|thumb\|left\|600px]]		[[File:Bioinformatics-infra.gif\|thumb\|left\|600px]]

			* scomp1038 aka lx5 aka abgc.asg.wur.nl: a VM hosted by FB-ICT.
			* scomp1090 aka lx6: HP Proliant server with 48 cores and 512GB RAM.
			* scomp1095 aka lx7: HP Proliant server with 48 cores and 192GB RAM.

2011-12-02T09:48:37Z

Bioinformatics infrastructure

← Older revision		Revision as of 11:48, 2 December 2011
Line 11:		Line 11:

	== Bioinformatics infrastructure ==		== Bioinformatics infrastructure ==
	Schematic of bioinformatics infrastructure at ABGC. All servers are running Red Hat Enterprise Linux (RHEL). Jobs can be [[submit job with qsub \| submitted]] with the Sun Grid Engine (SGE).		Schematic of bioinformatics infrastructure at ABGC. All servers are running Red Hat Enterprise Linux (RHEL). Jobs can be [[submit job with qsub \| submitted]] with the Sun Grid Engine (SGE). A user account is needed to work on the machines.
	[[File:Bioinformatics-infra.gif\|thumb\|left\|600px]]		[[File:Bioinformatics-infra.gif\|thumb\|left\|600px]]

2011-12-02T09:46:59Z

← Older revision		Revision as of 11:46, 2 December 2011
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	== Bioinformatics infrastructure ==		== Bioinformatics infrastructure ==
	Schematic of bioinformatics infrastructure at ABGC		Schematic of bioinformatics infrastructure at ABGC. All servers are running Red Hat Enterprise Linux (RHEL). Jobs can be [[submit job with qsub \| submitted]] with the Sun Grid Engine (SGE).
	[[File:Bioinformatics-infra.gif\|thumb\|left\|600px]]		[[File:Bioinformatics-infra.gif\|thumb\|left\|600px]]

2011-12-02T09:39:48Z

← Older revision		Revision as of 11:39, 2 December 2011
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	== Bioinformatics infrastructure ==		== Bioinformatics infrastructure ==
			Schematic of bioinformatics infrastructure at ABGC
	[[File:Bioinformatics-infra.gif\|thumb\|left\|600px]]		[[File:Bioinformatics-infra.gif\|thumb\|left\|600px]]

2011-12-02T09:39:28Z

← Older revision		Revision as of 11:39, 2 December 2011
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	== Bioinformatics infrastructure ==		== Bioinformatics infrastructure ==
	[[File:Bioinformatics-infra.gif\|thumb\|left\|600px~~\|alt=Overview of current bioinformatics resources at ABGC.~~]]		[[File:Bioinformatics-infra.gif\|thumb\|left\|600px]]

2011-12-02T09:38:11Z

Bioinformatics infrastructure

← Older revision		Revision as of 11:38, 2 December 2011
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	== Bioinformatics infrastructure ==		== Bioinformatics infrastructure ==
	[[File:Bioinformatics-infra.gif\|thumb\|left\|~~900px~~\|alt=Overview of current bioinformatics resources at ABGC.]]		[[File:Bioinformatics-infra.gif\|thumb\|left\|600px\|alt=Overview of current bioinformatics resources at ABGC.]]

2011-12-02T09:37:50Z

← Older revision		Revision as of 11:37, 2 December 2011
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	== Bioinformatics infrastructure ==		== Bioinformatics infrastructure ==
	[[File:Bioinformatics-infra.gif\|thumb\|left\|~~600px~~\|alt=Relationship between Q and p\|Relationship between ''Q'' and ''p'' using the Sanger (red) and Solexa (black) equations (described above). The vertical dotted line indicates ''p'' = 0.05, or equivalently, ''Q'' ≈ 13.]]		[[File:Bioinformatics-infra.gif\|thumb\|left\|900px\|alt=Overview of current bioinformatics resources at ABGC.]]